Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   122576
Name   oriT1_pMFPA43A1405B in_silico
Organism   Carnobacterium divergens strain MFPA43A1505
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_LT984412 (11410..11547 [+], 138 nt)
oriT length   138 nt
IRs (inverted repeats)      81..86, 88..93  (TTTGTA..TACAAA)
 21..28, 42..49  (AAAAGGGG..CCCCTTTT)
 25..30, 39..44  (GGGGAA..TTCCCC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 138 nt

>oriT1_pMFPA43A1405B
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCAACTTTGTAATACAAGAACGAAGTCATTTGTATTACAAAGTGATAGCTTGCCAGTATTTATGGATTTATATGGTCTATTTTGTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   14239 GenBank   WP_109840884
Name   Relaxase_CDIMF43_RS00370_pMFPA43A1405B insolico UniProt ID   _
Length   410 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 410 a.a.        Molecular weight: 47696.24 Da        Isoelectric Point: 7.1258

>WP_109840884.1 relaxase/mobilization nuclease domain-containing protein [Carnobacterium divergens]
MATIAKISNGASAASALNYALGQDRPMHEKTEQWLQDHQLERPVELTNCRAVAVGGTNGIDPFIAKEQFD
VIRQLHNQTKESNQVLRITQSFALDELNPKVQKDWQKANDLGVELAENLYPNHQSAVYTHLDGKNHVLHN
HIIVNKVNLDTGKKLREQKGESVQRAREMNDRLASRENWHILEPPKERQTETEKELIAKNEYSYMDDLRE
RINKSLQDVSVSSYETFKERLSDNGVILSERGQTFSYAFLDANNKQRRAREARLGSDFGRETILHELENR
ARQNEFSAVEQREPAITPLERDTQQRESEIVSLEQAIEPRKSEALKRESTINRFIDTIKQFAGRVPELTQ
RVTRKLKQTKEKILEDFERRFSKDMKNYEQEQQQNLEKQTHRDVQSEKKPTKDHDRGMSL

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(9-280)


  Protein structure



No available structure.




Host bacterium

ID   23002 GenBank   NZ_LT984412
Plasmid name   pMFPA43A1405B Incompatibility group   -
Plasmid size   35724 bp Coordinate of oriT [Strand]   11410..11547 [+]; 18536..18672 [+]
Host baterium   Carnobacterium divergens strain MFPA43A1505

Cargo genes

Drug resistance gene   tet(S)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -