Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 122570
• Name: oriT_paSTHERMO
• Organism: Streptococcus thermophilus isolate STH_CIRM_956
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_LR822021 (1432..1472 [-], 41 nt)
• oriT length: 41 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 41 nt

>oriT_paSTHERMO
CACTTTTACGAAGTAAAGTATAGTGCGTTATACTTTACATG

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_H0514_RS10360_paSTHERMO

• ID: 14233
• GenBank: WP_179973381
• Name: mobV_H0514_RS10360_paSTHERMO
• UniProt ID: _
• Length: 499 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 499 a.a.
• Molecular weight: 58443.00 Da
• Isoelectric Point: 5.9609

>WP_179973381.1 MobV family relaxase [Streptococcus thermophilus]
MSYMVARMQKMKAGNLGGTYKHNERVFETHSNKDIDPSRSHLNYELTVRDRSVSYERQIKDYVNENKISN
RAIRKDAVLCDEWIITSDKSFFEKLSEEETREFFETAKNYFSENYGEDNIAYASVHLDESTPHMHMGVVP
FQDGKLSSKAMFDKEELKKIQEDLPKYINEHGFELERGELNSEAKHKTVAEFKQEMAGKEIEKHLVLEYG
APEYVNHQEEFVTKEEYQEAYEVFQNELGAWVDKSDFSWRETTFQEKIDWVKNHQQEELQQLVSSRKPLE
DEIRTLNEVLKEKYEELDKIELRASESLSELSGVEEYINNLEKHSNALESKIGGLENEYLRLAKQNARLS
DLKIMSEKELAEIQLKKGMFGKEHVELTKEQFEKFKGLIYRSKNLVHEKELENGQLRRQMPLRSSKNGFE
ASLQRAKDKTKGESIDRLKSEIRGLKNENSVLRQQNDKMLGKLREFMPDKALKNFVSELKAIQPIVKIVK
RVIEKGLGL

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-194)

Protein structure

No available structure.

Host bacterium

• ID: 22996
• GenBank: NZ_LR822021
• Plasmid name: paSTHERMO
• Incompatibility group: -
• Plasmid size: 4403 bp
• Coordinate of oriT [Strand]: 1432..1472 [-]
• Host baterium: Streptococcus thermophilus isolate STH_CIRM_956

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -