Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 122559
• Name: oriT_Apa386Bp6
• Organism: Acetobacter pasteurianus 386B
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NC_021978 (5145..5165 [-], 21 nt)
• oriT length: 21 nt
• IRs (inverted repeats): _
• Location of nic site: 15..16
• Conserved sequence flanking the nic site: GTGCGCCCTT
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 21 nt

>oriT_Apa386Bp6
GTTTGCATAAGTGCGCCCTTA

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobQ_APA386B_RS15705_Apa386Bp6

• ID: 14222
• GenBank: WP_052366379
• Name: mobQ_APA386B_RS15705_Apa386Bp6
• UniProt ID: _
• Length: 575 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 575 a.a.
• Molecular weight: 66071.15 Da
• Isoelectric Point: 6.9729

>WP_052366379.1 MobQ family relaxase [Acetobacter pasteurianus]
MAIFHLSVKTVSRSTGRSAVAAAAYRSGDTLTNERDGRQHNYANRTGVDDSFIIAPAGCEWAYDRSTLWN
AAEQAEKRSNSVTAREYVLALPAELDAKERAGLARAFASAVVERYGVAADVALHAPSAGGDDRNYHAHIL
TTTREVEADGLGKKTRILDAAKTGGPEIESLRELWAMQCNEALERHQQPARIDHRSYERQGVDEMPTIHL
GPTSTAVERKHKAEQERKREPYKPRTFKAQENQRRQVLNESVQKLVQDLADTIREAIAQEKQVEQKQLLR
MVDWYCEEINRRNKISFKSGDAWINEQNRLMNGNPVAGAEALVRELPAYRQRLRVIEEKKAEIKRVEDEI
ERAESAIRRSENEIQEWHEEAGFFARIMPPEDIKKSRKNIVEWRESIAKKTSFLAILKAALSEMMSALKS
FVFGECQKPEIHAKLRLRGIAADYTVRRVQEWREEQRRDVEEQSRQWRLEQEEKARIEEMNKAKEERAQY
IKDCVDFLLRWPENERLKRFQTFAPSLYADENIRKYVLERVQGDKGSSSSDVVKDNPDITHSASVMKIDR
GHDDDWEDSGPSLGM

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (167-220)

• MobA/MobL family (MobA_MobL) (17-156)

Protein structure

No available structure.

Host bacterium

• ID: 22985
• GenBank: NC_021978
• Plasmid name: Apa386Bp6
• Incompatibility group: -
• Plasmid size: 6548 bp
• Coordinate of oriT [Strand]: 5145..5165 [-]
• Host baterium: Acetobacter pasteurianus 386B

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -