Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 122557 |
Name | oriT1_FDAARGOS_1152|unnamed1 |
Organism | Staphylococcus pasteuri strain FDAARGOS_1152 |
Sequence Completeness | - |
NCBI accession of oriT (coordinates [strand]) | NZ_CP068217 ( 66688..66795 [+], 108 nt) |
oriT length | 108 nt |
IRs (inverted repeats) | 39..45, 49..55 (TTGGGGA..TCCCCAA) 9..16, 21..28 (ATTTTTTC..GAAAAAAT) |
Location of nic site | _ |
Conserved sequence flanking the nic site |
_ |
Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 108 nt
>oriT1_FDAARGOS_1152|unnamed1
TAGCCACTATTTTTTCGTCAGAAAAAATCATAAGGGGCTTGGGGAGTATCCCCAACAAGCAGGCGACGCTACCACGTTAGTGGCTAGCAAAGCCAATGATTGCCCAAA
TAGCCACTATTTTTTCGTCAGAAAAAATCATAAGGGGCTTGGGGAGTATCCCCAACAAGCAGGCGACGCTACCACGTTAGTGGCTAGCAAAGCCAATGATTGCCCAAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileHost bacterium
ID | 22983 | GenBank | NZ_CP068217 |
Plasmid name | FDAARGOS_1152|unnamed1 | Incompatibility group | - |
Plasmid size | 104542 bp | Coordinate of oriT [Strand] | 37792..37899 [-]; 66688..66795 [+] |
Host baterium | Staphylococcus pasteuri strain FDAARGOS_1152 |
Cargo genes
Drug resistance gene | - |
Virulence gene | - |
Metal resistance gene | arsR, arsB, arsC, mco |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | - |