Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   122538
Name   oriT_pRHBSTW-00110_6 in_silico
Organism   Citrobacter freundii strain RHBSTW-00110
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP055587 (6477..6511 [-], 35 nt)
oriT length   35 nt
IRs (inverted repeats)      3..9, 13..19  (GTTTCTC..GAGAAAC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 35 nt

>oriT_pRHBSTW-00110_6
CAGTTTCTCGCAGAGAAACCGGTAAGTGCGCCCTC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   14207 GenBank   WP_139690572
Name   MobA_MobL_HV074_RS26820_pRHBSTW-00110_6 insolico UniProt ID   _
Length   702 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 702 a.a.        Molecular weight: 77802.73 Da        Isoelectric Point: 7.8908

>WP_139690572.1 MULTISPECIES: DNA-primase RepB domain-containing protein [Gammaproteobacteria]
MAIFHLTAKTGSRGGGQSAKAKADYIQREGKYARDKDEVLHTQSGNMPSWAAGAAEVSNYWDAADLYERA
NGRLFKEVEFALPIELTLDQQRVLVDDFAKYLTEVERLPYTLAIHKGGDENPHCHLMMSERKNDGVERKK
DQWFSRYNPKKPGQGGAQKTESLKPKAWLEKTRAAWADHANRALEMAGHEARIDHRTLEAQGIERLPTIH
LGPNVVEMEGRGIRTGRADTALSIETANTEIIDLQAYRESIDHERDRQSEAGQRDRRAGGADRAAGAELG
DSRRQGRDGDRRDSKCKHKAGWRVEDPAGQSREGVGRHSQGHEGRSRGTGHGSREGRGRSESVGMEDFRS
HLDGFSAVYASAADRIVALAVPGTQDDKGGGSVATTQAQVKGDRTSQAIARQLKAMGCDLYDIGIRDSAT
GKMMNREWTLQEVVENAAWLKRMNAQGNDIYIRPAESARHGLVLVDDLSSFDLDAMKEEGREPAAVIETS
PKNYQAWVKVAANAPAEHRGAIARRLAREYDADPASADSHHYGRLAGFTNQKPKHTTKTGYQPWVLCRAS
SGQAATTGPQMVQEAGQELESKERQQEQARRLEGIETAQPRRYHRTALDEYRSEMAGLVKRFGDDLSKCD
YIAAMKLAMKGIDPDEIAKAMAEASPGLMDRKAGHEADYIERTIKKVMALPEVQKIRAELEQTQKPSGYT
PR

  Protein domains


Predicted by InterproScan.

RepB DNA-primase from phage plasmid (RepB_primase)

(419-592)

MobA/MobL family (MobA_MobL)

(21-220)


  Protein structure



No available structure.




Host bacterium

ID   22964 GenBank   NZ_CP055587
Plasmid name   pRHBSTW-00110_6 Incompatibility group   IncQ1
Plasmid size   7945 bp Coordinate of oriT [Strand]   6477..6511 [-]
Host baterium   Citrobacter freundii strain RHBSTW-00110

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -