Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   122536
Name   oriT_pRHBSTW-00107_4 in_silico
Organism   Citrobacter sp. RHBSTW-00107
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP056864 (1796..1829 [+], 34 nt)
oriT length   34 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 34 nt

>oriT_pRHBSTW-00107_4
ACGATTTTGCGTAGCAAAGTCTAGTGAGTACACT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   14205 GenBank   WP_167593153
Name   mobV_HV072_RS27205_pRHBSTW-00107_4 insolico UniProt ID   _
Length   338 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 338 a.a.        Molecular weight: 38492.56 Da        Isoelectric Point: 10.1724

>WP_167593153.1 MULTISPECIES: MobV family relaxase [Gammaproteobacteria]
MRSPDWLDVRQNEGVSMANYAIMRCKKLTGMGSVASALQHCYRERETPNADAERTPENYCSVSQSADEAM
GKLRELLPEKRRKDAVLAVEYVMTASPEWWKEATPRQQAEFFAHSEQWLEKKYGKDRVVAAVVHRDEATP
HLSAFVVPLTQDGRLSAKEFIGGRSKMRDDQSTYAESVKKLGLERGIEGSRATHQTVQHYYQSINRGTRS
QVSISPDALEPRVLRKGIFTKDVEDQAAIAKRLSHAVNDGLAGTIAMASQSAQNAKRVRELQKTMDSQQK
RLQSVTEPFKGLSREQMTEILMMAQRFKQQNQEKEKQQRIEREKQRQTRSRGMGGMSR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(17-201)


  Protein structure



No available structure.




Host bacterium

ID   22962 GenBank   NZ_CP056864
Plasmid name   pRHBSTW-00107_4 Incompatibility group   -
Plasmid size   2694 bp Coordinate of oriT [Strand]   1796..1829 [+]
Host baterium   Citrobacter sp. RHBSTW-00107

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -