Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   122453
Name   oriT1_pC51827_2k in_silico
Organism   Klebsiella aerogenes strain C51857
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP139376 (215..248 [+], 34 nt)
oriT length   34 nt
IRs (inverted repeats)     _
Location of nic site      28..29
Conserved sequence flanking the
  nic site    		  GTGAGTATAC
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 34 nt

>oriT1_pC51827_2k
ACGATTTTGCGAAGCAAAGTCTAGTGAGTATACT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   14157 GenBank   WP_320892990
Name   mobV_SM788_RS25770_pC51827_2k insolico UniProt ID   _
Length   325 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 325 a.a.        Molecular weight: 36671.17 Da        Isoelectric Point: 10.4272

>WP_320892990.1 MobV family relaxase [Klebsiella aerogenes]
MAKFAIMRCKKLGNMGSVAKSLNHAFRERETLNADPTKTIDNEHMAASSTDEAMGKLRARLPEKRRKDAV
VCVEYMMTASPEWWQTASKQQQTEFFDKSLKWLTDKYGAENVIVASVHRDETSPHMTAFVAPITKDGRLS
AKDCIGNKTQMSNDQTTFAGAVSHLGLERGIEGSKAKHQTIKAFYAAIEKPTRDVTITKDDLKPRVVGKR
FLTSTYENSDDVAERLTRAVRKTYEPAVIGAAGAQEMASKVKSAQDTALHLRERLRPFEEVLRPLNKPMR
EKAIATIKIIGEKLKLEQQELEKQRKELLRSQRGIRKPKSKGIER

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-185)


  Protein structure



No available structure.




Host bacterium

ID   22879 GenBank   NZ_CP139376
Plasmid name   pC51827_2k Incompatibility group   -
Plasmid size   2334 bp Coordinate of oriT [Strand]   215..248 [+]; 1405..1436 [-]
Host baterium   Klebsiella aerogenes strain C51857

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -