Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 122452 |
| Name | oriT1_TSDC17.2-1.1|57  |
| Organism | Bacteroides finegoldii strain Bacteroides finegoldii TSDC17.2-1.1 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_OY725959 (2823..2996 [+], 174 nt) |
| oriT length | 174 nt |
| IRs (inverted repeats) | 57..63, 66..72 (CAATGGC..GCCATTG) 18..23, 37..42 (AACTAC..GTAGTT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 174 nt
>oriT1_TSDC17.2-1.1|57
CCCTCGGGAGAGCCCACAACTACGTAAGCGGAGCGTGTAGTTATAGTGGGCTATATCAATGGCAAGCCATTGTCTGCAAACTCCAGCCTACGGCTTCCGCTCTCCTCCGTCAGGGAGGTTTTTCATCATCGTTGCCGATTGGAGATGCACCGACCAGCACAAGGTCTAAATCGT
CCCTCGGGAGAGCCCACAACTACGTAAGCGGAGCGTGTAGTTATAGTGGGCTATATCAATGGCAAGCCATTGTCTGCAAACTCCAGCCTACGGCTTCCGCTCTCCTCCGTCAGGGAGGTTTTTCATCATCGTTGCCGATTGGAGATGCACCGACCAGCACAAGGTCTAAATCGT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 14156 | GenBank | WP_320582658 |
| Name | Relaxase_UHF62_RS17450_TSDC17.2-1.1|57 |
UniProt ID | _ |
| Length | 304 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 304 a.a. Molecular weight: 34471.65 Da Isoelectric Point: 10.2599
>WP_320582658.1 relaxase/mobilization nuclease domain-containing protein [Bacteroides finegoldii]
MIGKIKKGSGFKGCVNYVLGKEQAVLLHADGVLTESRGDIIRSFCMQTGMNPDLKKPVGHIALSYSAVDA
PKLTDEKMIQLAQEYMREMKITDTQYIIVRHQDREHPHVHIVFNRIDNNGKTISDRNDMYRNEQVCKKLK
AKHGLYFAGGKEQVKQHRLKEPDKSKYEIYTAVKNEIGKSRNWQQLQERLAEKGITVRFKRKGQTDEIQG
ISFSKGEYTFKGSEIDRSFSFSKLDKCFGYAGMNVAGSQRQITFAPVREQAPVPGKADSPLITGSLGLFS
ASSPPVDEEPNFNLRKKKKKRLKL
MIGKIKKGSGFKGCVNYVLGKEQAVLLHADGVLTESRGDIIRSFCMQTGMNPDLKKPVGHIALSYSAVDA
PKLTDEKMIQLAQEYMREMKITDTQYIIVRHQDREHPHVHIVFNRIDNNGKTISDRNDMYRNEQVCKKLK
AKHGLYFAGGKEQVKQHRLKEPDKSKYEIYTAVKNEIGKSRNWQQLQERLAEKGITVRFKRKGQTDEIQG
ISFSKGEYTFKGSEIDRSFSFSKLDKCFGYAGMNVAGSQRQITFAPVREQAPVPGKADSPLITGSLGLFS
ASSPPVDEEPNFNLRKKKKKRLKL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 22878 | GenBank | NZ_OY725959 |
| Plasmid name | TSDC17.2-1.1|57 | Incompatibility group | - |
| Plasmid size | 15723 bp | Coordinate of oriT [Strand] | 2823..2996 [+]; 8291..8641 [+] |
| Host baterium | Bacteroides finegoldii strain Bacteroides finegoldii TSDC17.2-1.1 |
Cargo genes
| Drug resistance gene | cfxA |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |