Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   122447
Name   oriT1_pLI42 in_silico
Organism   Listeria innocua strain LI42
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP071156 (53844..53867 [+], 24 nt)
oriT length   24 nt
IRs (inverted repeats)     _
Location of nic site      10..11
Conserved sequence flanking the
  nic site    		  GTGTGTTATA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 24 nt

>oriT1_pLI42
GTCTAGTGTGTTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   14152 GenBank   WP_181711143
Name   mobP2_JZX97_RS15230_pLI42 insolico UniProt ID   _
Length   446 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 446 a.a.        Molecular weight: 52358.18 Da        Isoelectric Point: 9.8980

>WP_181711143.1 MULTISPECIES: MobP2 family relaxase [Listeria]
MSKITAGIVLKTKFIVPNSPLNKSKQYWPNYIKYIDRDEAVRNAHYKEFSLIGNEEERAEEDKERNKKYI
DYMGNPQKTSGLFTEGKTRLTAAEKKKYKSAFQTAQDNNSVMFQHVISFDNDWLAKQGIYDPSIGMLDEK
RLQQVTSATMKSFLRKEEMDGSAIWLAAIHKNTKHFHVHISVTEPTPTRKFYSNKKRPELEKGTDGKPVR
DGRMAPATRRAVRSTVYSEIAQPGVFYQRIDDYAKAQLLTPLRESKEALRSEENVALFFELHQMYKAHSG
QWNYGNLNKHPAKKVVDQITTNYLMQHHPEEMQVFRKAWEHEGKLQQEAYGEKTEFNIHTYLESKDEKLY
KQLGNQVLQEVKKYDRSNGESKASGHYLDQQGNLKVTGRLTPKDKLERYRRRRGSVIYQLKKMDYELDNS
YKKWKNDRAFEELEQEMEREKSVHRG

  Protein domains


Predicted by InterproScan.

MobL relaxases (MobL)

(5-372)


  Protein structure



No available structure.




Host bacterium

ID   22873 GenBank   NZ_CP071156
Plasmid name   pLI42 Incompatibility group   -
Plasmid size   85554 bp Coordinate of oriT [Strand]   53844..53867 [+]; 55258..55283 [+]
Host baterium   Listeria innocua strain LI42

Cargo genes

Drug resistance gene   dfrG, tet(S), lnu(B), lsa(E), ant(6)-Ia, erm(B), aph(3')-III, cat
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA9