Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 122441 |
| Name | oriT_pKAM576_6  |
| Organism | Enterobacter asburiae strain KAM576 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_AP026892 (914..973 [+], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_pKAM576_6
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 14147 | GenBank | WP_264885052 |
| Name | Relaxase_OO861_RS25055_pKAM576_6 |
UniProt ID | _ |
| Length | 166 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 166 a.a. Molecular weight: 18554.11 Da Isoelectric Point: 9.2755
>WP_264885052.1 relaxase/mobilization nuclease domain-containing protein [Enterobacter asburiae]
MIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVRELIDASPYVKKYTSGVLSFAEADLPPGQR
EKLMASFERVLMPGLDKDQYSILWVEHADKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSGPGGH
MIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVRELIDASPYVKKYTSGVLSFAEADLPPGQR
EKLMASFERVLMPGLDKDQYSILWVEHADKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSGPGGH
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 7830 | GenBank | WP_264885053 |
| Name | WP_264885053_pKAM576_6 |
UniProt ID | _ |
| Length | 107 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 107 a.a. Molecular weight: 11791.57 Da Isoelectric Point: 8.5792
>WP_264885053.1 MobC family plasmid mobilization relaxosome protein [Enterobacter asburiae]
MLTMWVTEGEHRRLLERCDGRPLAAWMRQTCLDEKPARTGKLPSLSPALLRQLAGMGNNLNQIARHVNAG
GGTGHDRVQIVAALMAIDAGLERLRHAVLEKGTDDDR
MLTMWVTEGEHRRLLERCDGRPLAAWMRQTCLDEKPARTGKLPSLSPALLRQLAGMGNNLNQIARHVNAG
GGTGHDRVQIVAALMAIDAGLERLRHAVLEKGTDDDR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 22867 | GenBank | NZ_AP026892 |
| Plasmid name | pKAM576_6 | Incompatibility group | Col440II |
| Plasmid size | 3701 bp | Coordinate of oriT [Strand] | 914..973 [+] |
| Host baterium | Enterobacter asburiae strain KAM576 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |