Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   122439
Name   oriT_pKAM546_7 in_silico
Organism   Enterobacter roggenkampii strain KAM546
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_AP026880 (269..328 [+], 60 nt)
oriT length   60 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 60 nt

>oriT_pKAM546_7
GGGTTTCGGGGCGCAGCCCTGAACTAGTCACGTAGCGCTAGCGGAGCGTATACTGGCTTA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   14145 GenBank   WP_264884045
Name   Relaxase_OO938_RS23450_pKAM546_7 insolico UniProt ID   _
Length   256 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 256 a.a.        Molecular weight: 28534.42 Da        Isoelectric Point: 6.1508

>WP_264884045.1 relaxase/mobilization nuclease domain-containing protein [Enterobacter roggenkampii]
MADKRSKMLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLVEKPARAGKLPSISPALLRHEGASVLQGKPE
EVRELIDASPYAKKYTSGVLSFAEQDLPPGQRETLMASFERVLMPGLDKDQYSVLWVEHQDKGRLELNFL
VPNTELLTGKRLQPYYDRADRPRIDAWQTIVNGRMGLHDPNAPENRRALVTPSALPEAKQEAAQAITRGL
LALASSGELKTRQDVTEALESAGFEVVRTTKSSISIADPDGGETSD

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(89-246)


  Protein structure



No available structure.




Auxiliary protein

ID   7829 GenBank   WP_119002157
Name   WP_119002157_pKAM546_7 insolico UniProt ID   _
Length   161 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  Auxiliary protein sequence


Download         Length: 161 a.a.        Molecular weight: 17991.62 Da        Isoelectric Point: 9.7366

>WP_119002157.1 MULTISPECIES: MbeB family mobilization protein [Enterobacterales]
MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESEKRISAAILDHDRKLSSAMSQRTKGM
LRMVSQTWLTIVLVSALLIASSAGILWWQGQQILDNYMTIREQKSTQAMLSERNSGVQLTTCGEQRRRCV
RVNPEGGTFGEDSSWMILAGK

  Protein domains


Predicted by InterproScan.

MbeB-like, N-term conserved region (MbeB_N)

(1-52)


  Protein structure



No available structure.




Host bacterium

ID   22865 GenBank   NZ_AP026880
Plasmid name   pKAM546_7 Incompatibility group   Col440I
Plasmid size   3953 bp Coordinate of oriT [Strand]   269..328 [+]
Host baterium   Enterobacter roggenkampii strain KAM546

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -