Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 122433 |
Name | oriT1_pD120-1_13kb |
Organism | Klebsiella quasipneumoniae strain D120-1 |
Sequence Completeness | - |
NCBI accession of oriT (coordinates [strand]) | NZ_CP034682 ( 12795..12854 [+], 60 nt) |
oriT length | 60 nt |
IRs (inverted repeats) | _ |
Location of nic site | _ |
Conserved sequence flanking the nic site |
_ |
Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT1_pD120-1_13kb
GGGTTTCGGGGCGCAACCCTGAACCAGTCACGTAGCGCTAGCAGAGTGTATAATGGCTTA
GGGTTTCGGGGCGCAACCCTGAACCAGTCACGTAGCGCTAGCAGAGTGTATAATGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileHost bacterium
ID | 22859 | GenBank | NZ_CP034682 |
Plasmid name | pD120-1_13kb | Incompatibility group | Col440I |
Plasmid size | 13478 bp | Coordinate of oriT [Strand] | 6927..6986 [+]; 12795..12854 [+] |
Host baterium | Klebsiella quasipneumoniae strain D120-1 |
Cargo genes
Drug resistance gene | - |
Virulence gene | - |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | - |