Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 122419 |
| Name | oriT1_ES-108-1|unnamed5  |
| Organism | Enterococcus faecalis strain ES-108-1 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP138647 (190..239 [+], 50 nt) |
| oriT length | 50 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | 34..35 |
| Conserved sequence flanking the nic site |
GCTTGCAAAA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 50 nt
>oriT1_ES-108-1|unnamed5
AATATCGCAACATGGTACCATGTTGCTCCGCTTGCAAAAAGAAAGCCTAC
AATATCGCAACATGGTACCATGTTGCTCCGCTTGCAAAAAGAAAGCCTAC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 14133 | GenBank | WP_319451442 |
| Name | mobV_SHT68_RS16570_ES-108-1|unnamed5 |
UniProt ID | _ |
| Length | 559 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 559 a.a. Molecular weight: 65061.41 Da Isoelectric Point: 7.6288
>WP_319451442.1 MobV family relaxase [Enterococcus faecalis]
MSKIVARMEKMKDGNLSGIQRHNQRETNNHSNPDIDIEKSHLNYDLVNPGSINYREKIKQIIESQRISKR
AVRKDAVLVNEWIITSDTAFFQENTDTQAFFTDVVAYFSDRCGRQNVAYATVHLDETTPHMHLGIVPMYE
GRLSSKQVFSRQNLLEIQEELPTYLQERGYAIERGLRGSPQKHLSVKEYKDVQKELQVSKQELANQEQIL
AEKERELHSYEQAIFRIDRLLEEKNEEVKGKVQAMNQLETKRNEIINSLQTTVLPDLANIKEKKFSFNGL
KYVLSASDLSAIKSIAKDFETLRTQNKHLKIENNTLAQKNKELTQVNHEQELQITDLAYELTLKKEQLTA
FEEKQLNYDQSEQIKQELDRTTQTVSVLETENKRLKDKITDLTYDFSELNEKYQEIKLKFDGLTTYLHER
LGQAKETILFTIQQGVKYLQNAPKLKKSLERYSKDRTYLIDEKGTLFLPPDTGSKGVTMSLNPHFYPLKA
PFYNRETGCYEFVGEYMANGRSRTNTLQLSEEQVLENKAFTFEQSTDRKVWQESKNHSKGLSKNRGLSR
MSKIVARMEKMKDGNLSGIQRHNQRETNNHSNPDIDIEKSHLNYDLVNPGSINYREKIKQIIESQRISKR
AVRKDAVLVNEWIITSDTAFFQENTDTQAFFTDVVAYFSDRCGRQNVAYATVHLDETTPHMHLGIVPMYE
GRLSSKQVFSRQNLLEIQEELPTYLQERGYAIERGLRGSPQKHLSVKEYKDVQKELQVSKQELANQEQIL
AEKERELHSYEQAIFRIDRLLEEKNEEVKGKVQAMNQLETKRNEIINSLQTTVLPDLANIKEKKFSFNGL
KYVLSASDLSAIKSIAKDFETLRTQNKHLKIENNTLAQKNKELTQVNHEQELQITDLAYELTLKKEQLTA
FEEKQLNYDQSEQIKQELDRTTQTVSVLETENKRLKDKITDLTYDFSELNEKYQEIKLKFDGLTTYLHER
LGQAKETILFTIQQGVKYLQNAPKLKKSLERYSKDRTYLIDEKGTLFLPPDTGSKGVTMSLNPHFYPLKA
PFYNRETGCYEFVGEYMANGRSRTNTLQLSEEQVLENKAFTFEQSTDRKVWQESKNHSKGLSKNRGLSR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 22845 | GenBank | NZ_CP138647 |
| Plasmid name | ES-108-1|unnamed5 | Incompatibility group | - |
| Plasmid size | 4847 bp | Coordinate of oriT [Strand] | 190..239 [+]; 4461..4495 [-] |
| Host baterium | Enterococcus faecalis strain ES-108-1 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |