Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 122418
• Name: oriT_TR3_1|p1
• Organism: Aeromonas media strain TR3_1
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP075565 (1190..1223 [+], 34 nt)
• oriT length: 34 nt
• IRs (inverted repeats): 4..9, 13..18 (GCAAAC..GTTTGC)
• Location of nic site: 27..28
• Conserved sequence flanking the nic site: GTGCGCCCTT
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 34 nt

>oriT_TR3_1|p1
CACGCAAACGGAGTTTGCCTAAGTGCGCCCTTAC

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobQ_KI797_RS20920_TR3_1|p1

• ID: 14132
• GenBank: WP_167557709
• Name: mobQ_KI797_RS20920_TR3_1|p1
• UniProt ID: _
• Length: 516 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 516 a.a.
• Molecular weight: 58013.97 Da
• Isoelectric Point: 7.2188

>WP_167557709.1 MULTISPECIES: MobQ family relaxase [Aeromonas]
MAIYHCSVKTFSRRNGQSSTAAAAYRSGEKLLDENTGELHDYRRKGGVISATIILPSHAPAWASDRARLW
NEAERAETRINSTVAREFEIALPHELSPNDRERLAHEFARELVEKHGFAADVAIHAPPEFQKGGTGKVID
NQNHHAHILLSTRRLGPNGFTEKTREFDARSNERDDDSYLFGPALIEHWRERFALLQNLYLARAGVAAQV
DHRSNKARGLDAVPTRHLGPAVVGFERRMGIDSEKRQREALAVRAVDERVQELDAEVRGELAELDAQEAV
IAAELAENLRYVAMDDAELTEVISKTQPADIDAQVASSWEVSKAKSDVTELEGERDSVARRITSWEEGHG
FRTWLNSKGIGGAELDELRTELEQLGNRITKAIRRVRKATEAASARLWPEYNRRITLFDELIELRKAKRQ
RKILQVQKAQSLDFTTIALQRSLGAFGWADGGREWNACPKPLQRLIEDYLSTSGGERETMSAEIGRSRDV
RDWLAQQKRGIDPAPAPKRNHGPRLG

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (17-238)

Protein structure

No available structure.

Host bacterium

• ID: 22844
• GenBank: NZ_CP075565
• Plasmid name: TR3_1|p1
• Incompatibility group: -
• Plasmid size: 9182 bp
• Coordinate of oriT [Strand]: 1190..1223 [+]
• Host baterium: Aeromonas media strain TR3_1

Cargo genes

• Drug resistance gene: qnrS2
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -