Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   122412
Name   oriT_2.1523|unnamed3 in_silico
Organism   Staphylococcus xylosus strain 2.1523
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP066724 (25478..25572 [+], 95 nt)
oriT length   95 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 95 nt

>oriT_2.1523|unnamed3
TCGGCTGAAACTTTGAATATGAGTGTGCCTTCGTTTGTTAAAAACAAGGCACAAGGGGCTCGATTAGTGGCGCCCAAATTAGACAAAGTCACGCG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   14131 GenBank   WP_306419679
Name   Relaxase_JGY88_RS14205_2.1523|unnamed3 insolico UniProt ID   _
Length   329 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 329 a.a.        Molecular weight: 37662.92 Da        Isoelectric Point: 8.6106

>WP_306419679.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus xylosus]
MATTKISSTKSTSRAINYAEKRAEEKSGLNCDVEYAKSAFKASREVYGKTDGNQGHVIIQSFKPGEVTPE
QCNVLGLELAEKMAPEHQVAIYTHSDTDHIHNHIVINAVNLETGKKFNNDKQALRDLRKANDEVCLNHGL
SIPEPTSELRYTQAEQNLIDKGKKSWKNEVRMAIDETQATDIDSFKEQLLPKGISVERVTDKTITYRHIE
ANKKVRGSKLGDIYDKGAIIDGFESEKQRRHTKYESERTAPERTPKDQSTHRQPRTELNWADFEQSTEAQ
RNERKRRERAERAEREAREQDDRARAARAKQIESEPKVSKRTKGFDLEL

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(9-234)


  Protein structure



No available structure.




Host bacterium

ID   22838 GenBank   NZ_CP066724
Plasmid name   2.1523|unnamed3 Incompatibility group   -
Plasmid size   25872 bp Coordinate of oriT [Strand]   25478..25572 [+]
Host baterium   Staphylococcus xylosus strain 2.1523

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA21