Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   122390
Name   oriT_pSRB4 in_silico
Organism   Enterococcus italicus strain SD1
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_MT997147 (3997..4035 [+], 39 nt)
oriT length   39 nt
IRs (inverted repeats)      1..6, 11..16  (CTTTAC..GTAAAG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 39 nt

>oriT_pSRB4
CTTTACGAAAGTAAAGTATATTGTGCTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   14119 GenBank   WP_262984169
Name   mobV_LCC79_RS00005_pSRB4 insolico UniProt ID   _
Length   326 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 326 a.a.        Molecular weight: 38076.13 Da        Isoelectric Point: 6.6302

>WP_262984169.1 MobV family relaxase [Enterococcus italicus]
MKKMKNGNLGGIQKHNQREFENHSNEDIDPERSDMNYDLVNDDKINYNEKVNQIIDEQRVGTRAIRKDAV
KVDEWIISSDREFFNNLDPEQTKEFFQSVVDYFSENFGKQNVAYANVHLDETTPHMHMGVVPMKDGKLSS
KTVFTREKLTEIQEKLPQYLNEKGFELSSKTVFTREKLTEIQEKLPQYLNEKGFDIERGIEGSKSKHHDT
SEYKKLKENITKEQFEELSYDLDQAKKRNIVYQDILENDFKVKTIEPREMKARLVLNDLERGIQPSNLDQ
AKEWLRNLKNAVGTKIDPSRLAKGIDKLEKIIKVVFKVVKGMTLGL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-167)


  Protein structure



No available structure.




Host bacterium

ID   22816 GenBank   NZ_MT997147
Plasmid name   pSRB4 Incompatibility group   -
Plasmid size   4593 bp Coordinate of oriT [Strand]   3997..4035 [+]
Host baterium   Enterococcus italicus strain SD1

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -