Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 122385
• Name: oriT1_IVB6234|unnamed
• Organism: Staphylococcus arlettae strain IVB6234
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP094807 (3110..3207 [+], 98 nt)
• oriT length: 98 nt
• IRs (inverted repeats): 32..39, 45..52 (CTTTGTTT..AAACAAAG) 37..42, 46..51 (TTTGTT..AACAAA)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 98 nt

>oriT1_IVB6234|unnamed
TCTTCGGCTGAAACTTTGAATATGAGTGTGCCTTTGTTTGTTAAAAACAAAGCACAAGGGGCTCGATTAGTGGCGCCCAAATTAGACAAAGTCACGCG

oriT secondary structure

Predicted by RNAfold.

Relaxase

Relaxase_MUA71_RS13570_IVB6234|unnamed

• ID: 14117
• GenBank: WP_316965033
• Name: Relaxase_MUA71_RS13570_IVB6234|unnamed
• UniProt ID: _
• Length: 329 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 329 a.a.
• Molecular weight: 37537.76 Da
• Isoelectric Point: 9.7700

>WP_316965033.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus arlettae]
MATTKISATKSTSRAINYAEKRAEEKSGLNCDIDYAKSAFKASREVYGKTDGNQGHVIIQSFKPGEVTPE
QCNALGLELAEKIAPDHQVAIYTHSDTDHVHNHIVINAINLETGKKFNNNKQALKDIRQANDEVCRHHGL
SIPNNQAEMRYTQAEQNLIDKGKSSWKNDIRLAVDETQATDMKSFQEQLRPKGIIVERVTDKTITYRHIE
ADKKVRGSKLGDIYDKGGITHGFEAEKQRRRRKYESKSTTPERTPTDQSTHRQSRATLNWSSFDQSTQAL
FNERKRRERAERAEREAREQDDRARAARAKQIESEPTISKRTKGFDLEL

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (9-234)

Protein structure

No available structure.

Host bacterium

• ID: 22811
• GenBank: NZ_CP094807
• Plasmid name: IVB6234|unnamed
• Incompatibility group: -
• Plasmid size: 21772 bp
• Coordinate of oriT [Strand]: 3110..3207 [+]; 5837..5855 [-]
• Host baterium: Staphylococcus arlettae strain IVB6234

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: AcrIIA21