Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 122360 |
| Name | oriT1_IMT49658-1|unnamed4  |
| Organism | Enterobacter hormaechei strain IMT49658-1 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP135274 ( 9261..9320 [-], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT1_IMT49658-1|unnamed4
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 14099 | GenBank | WP_315451647 |
| Name | Relaxase_RP424_RS25350_IMT49658-1|unnamed4 |
UniProt ID | _ |
| Length | 224 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 224 a.a. Molecular weight: 24794.99 Da Isoelectric Point: 6.2802
>WP_315451647.1 relaxase/mobilization nuclease domain-containing protein [Enterobacter hormaechei]
MIVKFHPRGRGGGAGPVDYLLGKDRQRDGATVLQGKPEEVRELIDASPYVKKYTSGVLSFAEADLPPGQR
EKLMASFERVLMPGLDKDQYSILWVEHEDKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSGLPKTKQEAAEAITRGLLTLASSGELKSRQDVTEALERSGFEVVRTTKS
SISIADPDGGETSD
MIVKFHPRGRGGGAGPVDYLLGKDRQRDGATVLQGKPEEVRELIDASPYVKKYTSGVLSFAEADLPPGQR
EKLMASFERVLMPGLDKDQYSILWVEHEDKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSGLPKTKQEAAEAITRGLLTLASSGELKSRQDVTEALERSGFEVVRTTKS
SISIADPDGGETSD
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 7812 | GenBank | WP_180241484 |
| Name | WP_180241484_IMT49658-1|unnamed4 |
UniProt ID | _ |
| Length | 107 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 107 a.a. Molecular weight: 11929.70 Da Isoelectric Point: 8.5732
>WP_180241484.1 MULTISPECIES: MobC family plasmid mobilization relaxosome protein [Enterobacteriaceae]
MLTMWVTEDEHRRLLERCDGRQLAAWMRQTCLDEKPARTGKLPSISPALLRQLAGMGNNLNQIARRVNAG
GGTGHDRVQIVAALMTIDAGLERLRHAVLEKGTDDDR
MLTMWVTEDEHRRLLERCDGRQLAAWMRQTCLDEKPARTGKLPSISPALLRQLAGMGNNLNQIARRVNAG
GGTGHDRVQIVAALMTIDAGLERLRHAVLEKGTDDDR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
| ID | 7812 | GenBank | WP_180241484 |
| Name | WP_180241484_IMT49658-1|unnamed4 |
UniProt ID | _ |
| Length | 107 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 107 a.a. Molecular weight: 11929.70 Da Isoelectric Point: 8.5732
>WP_180241484.1 MULTISPECIES: MobC family plasmid mobilization relaxosome protein [Enterobacteriaceae]
MLTMWVTEDEHRRLLERCDGRQLAAWMRQTCLDEKPARTGKLPSISPALLRQLAGMGNNLNQIARRVNAG
GGTGHDRVQIVAALMTIDAGLERLRHAVLEKGTDDDR
MLTMWVTEDEHRRLLERCDGRQLAAWMRQTCLDEKPARTGKLPSISPALLRQLAGMGNNLNQIARRVNAG
GGTGHDRVQIVAALMTIDAGLERLRHAVLEKGTDDDR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 22786 | GenBank | NZ_CP135274 |
| Plasmid name | IMT49658-1|unnamed4 | Incompatibility group | ColRNAI |
| Plasmid size | 12725 bp | Coordinate of oriT [Strand] | 2897..2956 [-]; 9261..9320 [-] |
| Host baterium | Enterobacter hormaechei strain IMT49658-1 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |