Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 122345
• Name: oriT_pUTI-045-3
• Organism: Staphylococcus saprophyticus strain UTI-045
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP054834 (6877..6977 [+], 101 nt)
• oriT length: 101 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 101 nt

>oriT_pUTI-045-3
TCATCTGCCGAAACTTTGAATATGAGTGTGCCGAATTTTGTTAAGAAAAAGGCACATGGTAGTCGATTGGTAGCGCCCAAATTTGATAAAGAGACGCGACA

oriT secondary structure

Predicted by RNAfold.

Relaxase

Relaxase_HSZ48_RS13505_pUTI-045-3

• ID: 14092
• GenBank: WP_069794587
• Name: Relaxase_HSZ48_RS13505_pUTI-045-3
• UniProt ID: _
• Length: 319 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 319 a.a.
• Molecular weight: 36817.89 Da
• Isoelectric Point: 8.8338

>WP_069794587.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Staphylococcus]
MATTKLGNTKSASRAINYAEKRAEEKSGLNCDVDYAKSAFKATRSLYGKEDGIQAHTIIQSFKPGEVTPE
QCNQIGLELAEKIAPNHQVAVYTHTDKNHYHNHIVINSIDLETGNKYQSNKKQREFVKQANDNICREYGL
SVPEKQRETRYTQAEYEIGKEAQKGNKPIPWKEQIRMVIDETQAINYEQLGADLLQNGIKIERITEKTIT
YKHLEEDKKVRGSKLGEKYDKGGLERGYDGRIKSREQENTRETGPDRKATQSEWDNFADNTRKLEHDRRS
SEAARLAHEKSIRDKEEREREREQAQRTSKKSRGFDLEL

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (8-238)

Protein structure

No available structure.

Host bacterium

• ID: 22771
• GenBank: NZ_CP054834
• Plasmid name: pUTI-045-3
• Incompatibility group: -
• Plasmid size: 8128 bp
• Coordinate of oriT [Strand]: 6877..6977 [+]
• Host baterium: Staphylococcus saprophyticus strain UTI-045

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -