Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 122338 |
| Name | oriT1_p1196A  |
| Organism | Lactococcus cremoris strain 1196 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP127216 ( 10236..10372 [-], 137 nt) |
| oriT length | 137 nt |
| IRs (inverted repeats) | 21..28, 42..49 (AAAAGGGG..CCCCTTTT) 25..30, 39..44 (GGGGAA..TTCCCC) |
| Location of nic site | 104..105 |
| Conserved sequence flanking the nic site |
GCTTGCAGTA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 137 nt
>oriT1_p1196A
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATGGTCTATTTTGTT
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATGGTCTATTTTGTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 14088 | GenBank | WP_205536509 |
| Name | Relaxase_LL1196_RS13650_p1196A |
UniProt ID | _ |
| Length | 410 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 410 a.a. Molecular weight: 47652.36 Da Isoelectric Point: 9.0596
>WP_205536509.1 relaxase/mobilization nuclease domain-containing protein [Lactococcus cremoris]
MATIAKISNGASAASAINYALGQDRPMHEKTEQWLQDLQLERPVELTNCRAVAVGGTNGIDPFIAKEQFD
VIRQLHNQTKESNQVLRITQSFALDELNPKVQKDWQKANDLGVELAENLYPNHQSAVYTHLDGKNHVLHN
HIIVNKVNLETGNKLREQKGESVQRAREMNDRLASRENWHTLEPPKERQTETEKELIAKNEYSYMDDLRE
RINKSLQDVSVSSYKAFKERLSDNGVILSERGQAFSYAFLDANNKQRRARETRLGSDFGRETILHELENR
ARQNEFRAVEQREPAITPLERDTQQRESEIVSLEQAIEPRKSEALKRESKINRFIDTIKQLAGRVPELTQ
RVTRKLKQTKDKILDDFERRFSKDMKNYEQEQQKILEKQANRDVQSEKKPTKDHDRGMSR
MATIAKISNGASAASAINYALGQDRPMHEKTEQWLQDLQLERPVELTNCRAVAVGGTNGIDPFIAKEQFD
VIRQLHNQTKESNQVLRITQSFALDELNPKVQKDWQKANDLGVELAENLYPNHQSAVYTHLDGKNHVLHN
HIIVNKVNLETGNKLREQKGESVQRAREMNDRLASRENWHTLEPPKERQTETEKELIAKNEYSYMDDLRE
RINKSLQDVSVSSYKAFKERLSDNGVILSERGQAFSYAFLDANNKQRRARETRLGSDFGRETILHELENR
ARQNEFRAVEQREPAITPLERDTQQRESEIVSLEQAIEPRKSEALKRESKINRFIDTIKQLAGRVPELTQ
RVTRKLKQTKDKILDDFERRFSKDMKNYEQEQQKILEKQANRDVQSEKKPTKDHDRGMSR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 22765 | GenBank | NZ_CP127216 |
| Plasmid name | p1196A | Incompatibility group | - |
| Plasmid size | 35577 bp | Coordinate of oriT [Strand] | 32140..32276 [+]; 10236..10372 [-] |
| Host baterium | Lactococcus cremoris strain 1196 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | cpsI |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |