Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 122290 |
| Name | oriT1_pTB504  |
| Organism | Salmonella sp. SSDFZ54 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP034823 ( 8564..8847 [+], 284 nt) |
| oriT length | 284 nt |
| IRs (inverted repeats) | 247..253, 262..268 (CCCCTGG..CCAGGGG) 245..250, 253..258 (CGCCCC..GGGGCG) 119..127, 137..145 (GCGGTGTTG..CAACACCGC) 31..37, 42..48 (GCAAAAA..TTTTTGC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 284 nt
>oriT1_pTB504
GTTCTCATGCCCGAAATGCCCACACCCCACGCAAAAACAATTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTCTTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTTGGCGCAGCTACAACACCGCGCCGACACCGCTTTTTAGGGGTGGTACTGACTATTTTCATAAAAAACATCATCTTATATTAGGGGTGCTGCTAGCTGCGCGGTGTGTTTTTTTACAGGACGCCCCTGGGGGCGCTGCCAGGGGTGTCTGTTCAGATATG
GTTCTCATGCCCGAAATGCCCACACCCCACGCAAAAACAATTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTCTTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTTGGCGCAGCTACAACACCGCGCCGACACCGCTTTTTAGGGGTGGTACTGACTATTTTCATAAAAAACATCATCTTATATTAGGGGTGCTGCTAGCTGCGCGGTGTGTTTTTTTACAGGACGCCCCTGGGGGCGCTGCCAGGGGTGTCTGTTCAGATATG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 22717 | GenBank | NZ_CP034823 |
| Plasmid name | pTB504 | Incompatibility group | ColRNAI |
| Plasmid size | 9337 bp | Coordinate of oriT [Strand] | 3887..4170 [+]; 8564..8847 [+] |
| Host baterium | Salmonella sp. SSDFZ54 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |