Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   122267
Name   oriT_TN50|6.4-Qnr in_silico
Organism   Aeromonas dhakensis isolate TN50
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_LR963098 (1396..1431 [+], 36 nt)
oriT length   36 nt
IRs (inverted repeats)      3..9, 13..19  (GTTTCTC..GAGAAAC)
Location of nic site      30..31
Conserved sequence flanking the
  nic site    		  GTGCGCCCTC
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 36 nt

>oriT_TN50|6.4-Qnr
CAGTTTCTCGCAGAGAAACCGGTAAGTGCGCCCTCC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   14043 GenBank   WP_172688246
Name   MobA_MobL_NMK74_RS22410_TN50|6.4-Qnr insolico UniProt ID   _
Length   705 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 705 a.a.        Molecular weight: 77910.75 Da        Isoelectric Point: 7.1945

>WP_172688246.1 MULTISPECIES: DNA-primase RepB domain-containing protein [Gammaproteobacteria]
MAIFHLAAKTGSRGGGQSAKAKADYIQREGKYARDKDEVLHTQSGNMPSWAAGAAEVGNYWDAADLYERA
NGRLFKEVEFALPIELTLDQQRVLVDDFAKYLTEVERLPYTLAIHKGGGENPHCHLMMSERKNDGVERKK
DQWFSRYNPKNPGQGGAQKTESLKPKAWLEKTRAAWADHANRALEMAGHEARIDHRTLEAQGIERLPTIH
LGPNVVEMEGRGIRTGRADTALSIETANTEIIDLQAYRESIDHERDRQSEAGQRDRRAGGADRAAGAELG
DSRRQGRDGDRGDSKCQHKAGWRVGDPAGQSRDGVGRHSQGHEGRSRGTGQGSREGRGRSESVGMEDFRS
HLDGFSAVYASAADRIVALADPGTQDDKGGGNVATTQAQVKGDRTSQAIARQLKAMGCDLYDIGIRDSAT
GKMMNREWTLQEVVENAAWLKRMNAQGNDIYIRPAESARHGLVLVDDLSSFDLDAMKEEGREPAAVIETS
PKNYQAWVKVAANAPAEHRGAIARRLAREYDADPASADSHHYGRLAGFTNQKPKHTTKTGYQPWVLCRAS
SGQAATTGPQMVQEAGQELESKERQQEQARRLEGIETAQPRRYHRTALDEYRSEMAGLVKRFGDDLSKCD
YIAAMKLAMKGIDPDEIAKAMAEASPGLMDRKAGHEADYIERTIKKVMALPEVQKIRAELEQTQKTKGEY
PTLEM

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(21-220)

RepB DNA-primase from phage plasmid (RepB_primase)

(419-592)


  Protein structure



No available structure.




Host bacterium

ID   22694 GenBank   NZ_LR963098
Plasmid name   TN50|6.4-Qnr Incompatibility group   IncQ1
Plasmid size   6386 bp Coordinate of oriT [Strand]   1396..1431 [+]
Host baterium   Aeromonas dhakensis isolate TN50

Cargo genes

Drug resistance gene   qnrS2
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -