Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   122265
Name   oriT_pLF25 in_silico
Organism   Staphylococcus epidermidis strain 25S
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_MH090916 (2150..2247 [-], 98 nt)
oriT length   98 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 98 nt

>oriT_pLF25
TCGGCAGAAACTTTGAATATGACAGTGCCTAATTTCGTTAAGAAAAAGGCACAAGGCAGTCGATTAGTGTCGCCAAAATTAGACAAAGAAACGCGACA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   14041 GenBank   WP_011167206
Name   Rep_trans_HTR56_RS00005_pLF25 insolico UniProt ID   B9ECE3
Length   314 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 314 a.a.        Molecular weight: 38086.43 Da        Isoelectric Point: 7.1335

>WP_011167206.1 MULTISPECIES: replication initiation factor domain-containing protein [Bacilli]
MSKKAEEIQAKQSLEKENSNFSKTGYSNSRLNRHIMYTPEPKLHFDAMTIVGNLNKNNAHKLSEFMSIAP
QIRLWDILQTKFKAKALQEKVYIEYDKVKADAWDRRNMRVEFNPNKLTHEEMLWLKQNIIDYMEDDGFTR
LDLAFDFEDDLSDYYAMTDKSVKKTIFYGRNGKPETKYFGVRDSDRFIRIYNKKQERKDNADIEVMSEHL
WRVEIELKRDMVDYWNDCFNDLHILKPDWSSLEKVKDQAMIYMLIHEESTWGKLERRTKNKYREMLKSIS
EIDLTDLMKLTLKENEKQLQKQIEFWQREFRFWE

  Protein domains


Predicted by InterproScan.

Replication initiation factor (Rep_trans)

(138-304)


  Protein structure


Source ID Structure
AlphaFold DB B9ECE3


Host bacterium

ID   22692 GenBank   NZ_MH090916
Plasmid name   pLF25 Incompatibility group   -
Plasmid size   4397 bp Coordinate of oriT [Strand]   2150..2247 [-]
Host baterium   Staphylococcus epidermidis strain 25S

Cargo genes

Drug resistance gene   str
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -