Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   122260
Name   oriT_pWB224_3 in_silico
Organism   Staphylococcus warneri strain WB224
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP053473 (3021..3118 [-], 98 nt)
oriT length   98 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 98 nt

>oriT_pWB224_3
TCTGCTGAAACTTTAAATATGAGTGTGCCTAATTTCGTTAAGAAAAAGGCACAGGGTAGTCGATTAGTCGCACCTAAATTTGATAAAGCAACGCGACA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   14038 GenBank   WP_171484822
Name   Rep_trans_EYQ96_RS00420_pWB224_3 insolico UniProt ID   _
Length   309 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 309 a.a.        Molecular weight: 37329.28 Da        Isoelectric Point: 5.8044

>WP_171484822.1 replication initiation factor domain-containing protein [Staphylococcus warneri]
MTEENHSNYLQNRDLDNFSKTGYSNSRLSGNFFTTPQPNLSFDAMTIVGNLNKDNAEQLSKFMSVEPRFR
LWDILQTKFKAKALQEKVYIEYDKVRADSWDRRNMRVEFNPNKLTYDEMLWLKRNVISYMEDDGFTRLDL
AFDFEEDLSDYYTMTDKAVKKTIFYGRNGKPETKYFGVRDSDRFIRIYNKKQERKDNADIEINSEHLWRV
EIELKRNMVDMWNSCFDDLHILKPNWTVLEKIKEQAMVYMLIHEEDTWGKLERHAKYKYKNLIKEISPVD
LTELMKSTLRENEKQLQKQIDFWLSDFEF

  Protein domains


Predicted by InterproScan.

Replication initiation factor (Rep_trans)

(135-282)


  Protein structure



No available structure.




Host bacterium

ID   22687 GenBank   NZ_CP053473
Plasmid name   pWB224_3 Incompatibility group   -
Plasmid size   4065 bp Coordinate of oriT [Strand]   3021..3118 [-]
Host baterium   Staphylococcus warneri strain WB224

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -