Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 122230 |
| Name | oriT1_pMS200408A_2  |
| Organism | Lactococcus formosensis strain MS200408A |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_AP027277 ( 1701..1837 [-], 137 nt) |
| oriT length | 137 nt |
| IRs (inverted repeats) | 21..28, 42..49 (AAAAGGGG..CCCCTTTT) 25..30, 39..44 (GGGGAA..TTCCCC) |
| Location of nic site | 104..105 |
| Conserved sequence flanking the nic site |
GCTTGCAGTA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 137 nt
>oriT1_pMS200408A_2
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGTTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGGTTTATATTTTCTATTTTGTT
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGTTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGGTTTATATTTTCTATTTTGTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 22657 | GenBank | NZ_AP027277 |
| Plasmid name | pMS200408A_2 | Incompatibility group | - |
| Plasmid size | 18832 bp | Coordinate of oriT [Strand] | 11117..11253 [-]; 1701..1837 [-] |
| Host baterium | Lactococcus formosensis strain MS200408A |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |