Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 122181
• Name: oriT_pVVSJ3
• Organism: Staphylococcus petrasii strain CCM 8494
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_SRLF01000028 (1063..1182 [+], 120 nt)
• oriT length: 120 nt
• IRs (inverted repeats): 52..59, 61..68 (TTGGGGAT..ATCCCCAA) 22..29, 34..41 (ATTTTTTC..GAAAAAAT) 1..9, 13..21 (AGTGGCTAA..TTAGCCACT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 120 nt

>oriT_pVVSJ3
AGTGGCTAACAATTAGCCACTATTTTTTCGTCAGAAAAAATCCTAAGGGGCTTGGGGATAATCCCCAACAAGCAGGCGTCGCTACCACGTGAGTGGCTAGCAAAGCCAATGCTTGCCAAA

oriT secondary structure

Predicted by RNAfold.

Relaxase

Relaxase_E2557_RS13055_pVVSJ3

• ID: 13978
• GenBank: WP_103298700
• Name: Relaxase_E2557_RS13055_pVVSJ3
• UniProt ID: _
• Length: 335 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 335 a.a.
• Molecular weight: 38478.14 Da
• Isoelectric Point: 6.2009

>WP_103298700.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus petrasii]
MATTKLSATKSTSRAINYAEKRAEEKSGLNCDIDYAKSSFKATRELYGKTGGNEGHVIIQSFKPGEVTPE
QCNQLGLELAEKFAPNHQVAVYTHNDTDHVHNHIVINSIDLETGKKFNNNKQALRDLRDFNDDVCREHGL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSTATNMDEFKDHLSQYGIEIARVTPKSI
TYRHLAEDKKVRGRRLGEDYNKGGIEDGFERQIQRQQQEREDDNDIQPKRPTSNRDEPTQRDTGVTQSDW
DKFAQDTNELERRRQAAESARLADEKARRDREERERAKQASRTIIDNDRDHGLEL

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (9-242)

Protein structure

No available structure.

Host bacterium

• ID: 22608
• GenBank: NZ_SRLF01000028
• Plasmid name: pVVSJ3
• Incompatibility group: -
• Plasmid size: 10549 bp
• Coordinate of oriT [Strand]: 1063..1182 [+]
• Host baterium: Staphylococcus petrasii strain CCM 8494

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: cadC
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: AcrIIA21