Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 122077 |
| Name | oriT_BFG-353|unnamed1  |
| Organism | Bacteroides faecis strain BFG-353 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_JANUJJ010000001 (1053..1225 [-], 173 nt) |
| oriT length | 173 nt |
| IRs (inverted repeats) | 57..63, 66..72 (CAATGGC..GCCATTG) 18..23, 37..42 (AACTAC..GTAGTT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 173 nt
>oriT_BFG-353|unnamed1
CCCTCGGGAGAGCCCACAACTACGTAAGCGGAGCGTGTAGTTATAGTGGGCTATATCAATGGCAAGCCATTGTCTGCAAACTCCAGCCTACGGCTTCCGCTCTCCTCCGTCAGGGAGGTTTTCATCATCGTTGCCGATTGGAGATGCACCGACCAGCACAAGGTCTAAATCGT
CCCTCGGGAGAGCCCACAACTACGTAAGCGGAGCGTGTAGTTATAGTGGGCTATATCAATGGCAAGCCATTGTCTGCAAACTCCAGCCTACGGCTTCCGCTCTCCTCCGTCAGGGAGGTTTTCATCATCGTTGCCGATTGGAGATGCACCGACCAGCACAAGGTCTAAATCGT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 22504 | GenBank | NZ_JANUJJ010000001 |
| Plasmid name | BFG-353|unnamed1 | Incompatibility group | - |
| Plasmid size | 11747 bp | Coordinate of oriT [Strand] | 1053..1225 [-] |
| Host baterium | Bacteroides faecis strain BFG-353 |
Cargo genes
| Drug resistance gene | cfxA5 |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |