Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   122075
Name   oriT_pcz_Lmg43_16252_2 in_silico
Organism   Paenibacillus larvae strain czLmg43_16252
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_JAVJGQ010000003 (23933..23963 [-], 31 nt)
oriT length   31 nt
IRs (inverted repeats)      1..7, 11..17  (ACATTGC..GCAATGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 31 nt

>oriT_pcz_Lmg43_16252_2
ACATTGCGAAGCAATGTATAAGTGCGCCCTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   13922 GenBank   WP_104932931
Name   mobQ_RB154_RS23500_pcz_Lmg43_16252_2 insolico UniProt ID   _
Length   486 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 486 a.a.        Molecular weight: 57760.64 Da        Isoelectric Point: 10.2432

>WP_104932931.1 MobQ family relaxase [Paenibacillus larvae]
MAIYHFSMQVAKRSNGSSSIAMAAYRSGEKLFEERTGETKHYKRKVQPETMILAPKHAPSWVQNRNRLWN
EVEKAEKRVDAQLCREFNLALPKELNKEEQRKLIHDFCKEQLVDRGMIADIAIHRDDEQNPHAHVMLTMR
DIKDDGFGKKNRDWNDKELMKSWREEWANYANRSLERAGFSERIDHRSLAEQGIDRIPTIHEGPKVREME
ERGVTTDRGDLQREIREINRKIIELEKYREEKEKQAKTKTITARVKQPVATVTDLSRYTSYEKPIIRKAE
KIIGGPVSSFSIEQKMLDLGTKERELSLKQEKIGQTLERFERANSVFKELEEHQQELDKMNLYQRRFSHK
AKDIRNEIKNIRENLKEMGFLNKEKFDERFNKTLEYTNNDKKFIERRIKQIDKQQGQLQEARKVVLKAEQ
REKERTLRTHSLDRSLQKEQAVSGRPIGNDLTNAMLQSIKKEIRKAEREQDLQRRENDRKREGRRP

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(18-212)


  Protein structure



No available structure.




T4CP

ID   16317 GenBank   WP_309557492
Name   t4cp2_RB154_RS23510_pcz_Lmg43_16252_2 insolico UniProt ID   _
Length   546 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 546 a.a.        Molecular weight: 61933.65 Da        Isoelectric Point: 6.2458

>WP_309557492.1 VirD4-like conjugal transfer protein, CD1115 family [Paenibacillus larvae]
MDYVEHPFFTMSNVLSPAAEGIEYDIHKNWLNLQVVYLGLIVLAAMKLFFKRNTSAKDASDYGAHGTARW
ANDSEIKSWWHHPIDIPGLFLGKDEKKYCIHPESSELNQHAIVFGGSGTGKSRSVIIPNILKAIREGKSI
VVTDTKGTVYNQTANMLRKKGYAIRVLNYLKPKQSSCYNRLDFVKDMSDAIKLSNTIIENSSNRHASSDE
MWRNAEQSYITACILYVKSVRPPSEQHMSSVLAFGVWGAGNPELMDFLFSQLPYSHPAKQMYNIFRIAED
KTRTGILIGFASRLQVFLDPGIAQMWSKSDFDLKKIGLEKTALFLLISDRDTTYKMPLALTWAGLFQDLL
DEADGQPDGVLPIKVKCLMDECANIGTINNFEQITSTARSRGVEIVPIFQSLPQLKNRYDKERWAEIMSN
MDTILYLGTNDLETAKYFSQIIGPTTLMVQSYIGRDSGNGGMNENYVGRPLMQPSELRQWDRTKMIVLQN
GKNPAALYKVDYTELEPDLNLEDWRTITEHNFSVQISDYGQLFVQEYGHLLEEVES

  Protein domains


Predicted by InterproScan.

Type IV secretory system Conjugative DNA transfer (T4SS-DNA_transf)

(71-503)

  Protein structure



No available structure.




Host bacterium

ID   22502 GenBank   NZ_JAVJGQ010000003
Plasmid name   pcz_Lmg43_16252_2 Incompatibility group   -
Plasmid size   62304 bp Coordinate of oriT [Strand]   23933..23963 [-]
Host baterium   Paenibacillus larvae strain czLmg43_16252

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -