Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 122000
• Name: oriT_PAMC 28687|5
• Organism: Burkholderia sp. PAMC 28687
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP014512 (5458..5487 [+], 30 nt)
• oriT length: 30 nt
• IRs (inverted repeats): 1..7, 11..17 (GTTTCTC..GAGAAAC)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 30 nt

>oriT_PAMC 28687|5
GTTTCTCGCAGAGAAACAACTAAGTGCGCC

oriT secondary structure

Predicted by RNAfold.

Relaxase

MobA_MobL_AX768_RS31755_PAMC 28687|5

• ID: 13884
• GenBank: WP_082779226
• Name: MobA_MobL_AX768_RS31755_PAMC 28687|5
• UniProt ID: _
• Length: 393 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 393 a.a.
• Molecular weight: 43823.18 Da
• Isoelectric Point: 9.4922

>WP_082779226.1 MobA/MobL family protein [Burkholderia sp. PAMC 28687]
MASYHCKVNVGGKGKGAAHAAYISREGKYSGSKRYEDLETTAFGNMPLWAEHNAAHFWDAADEHERANGA
TYREIEIALPRELSPAQRRALVEDFVHQALGNRHAYQWAIHTPKASLEKGEQPHAHIMYSERTRDGIDRD
PARYFKRYNSSDPRRGGCRKDSAGTEERLEATRKLWADVQNAHLEHHGHAARVDHRSLKVQGIDRQPEKH
IGPSRVADMPATDVTALLERRAAEGELLRAQQAVGMIDLSGDLAAARVERARQQKVTSVPDPRERLARFR
AGRLLEPAPAAPMPSVDQLKAQDRASVEAQLAEKYTVRPLNLDASYPSVGRILLATDFHVAQHLGRDEAT
IHDRGLLSEPIDVGQSVAIRYREGRGMVEPKSPMQSKARGPRV

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (26-214)

Protein structure

No available structure.

Host bacterium

• ID: 22427
• GenBank: NZ_CP014512
• Plasmid name: PAMC 28687|5
• Incompatibility group: -
• Plasmid size: 6086 bp
• Coordinate of oriT [Strand]: 5458..5487 [+]
• Host baterium: Burkholderia sp. PAMC 28687

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -