Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   121996
Name   oriT_pTK9 in_silico
Organism   Sphingobium sp. TKS
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP005093 (3439..3471 [+], 33 nt)
oriT length   33 nt
IRs (inverted repeats)      4..9, 14..19  (GCAAAC..GTTTGC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 33 nt

>oriT_pTK9
CACGCAAACGCAAGTTTGCATAAGTGCGCCCTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   13877 GenBank   WP_013044869
Name   mobQ_K426_RS29970_pTK9 insolico UniProt ID   D4Z9E2
Length   407 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 407 a.a.        Molecular weight: 45752.87 Da        Isoelectric Point: 6.9564

>WP_013044869.1 MULTISPECIES: MobQ family relaxase [Sphingomonadaceae]
MASFHLAVKAIGRSAGRSATAAAAYRAGVEITDERTGLVHDYTRKQGVEHSELMLPTDAPEWAADRERLW
NAAELAETRKNATVAREYEIALPVELSADERRELALGLAREISERHGVAVDVSIHAPGREGDQRNHHAHL
LTTTRRLGPEGLGEKTRELDQKQSGEVERWRERWAEMQNRALELANVPDRVDHRSHQRQGIEQEPTVHMG
PSATAMERRAEQVAAREGRAYEPVTAVGQHNAGVVERAGLRQYIERGTEWLRDMGQRIAGRLHDVAASLS
GAVERDRREAAEVQLAREAQERLAADRARQEAQERQQVRERERVAEKFNTIAGKREAGAHGYGDHNSDWK
ATPEALRKAVDAYNGANQHTKDLYIEQIQREPKMARAVGQLIGERELILQRDRGMSL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-219)


  Protein structure


Source ID Structure
AlphaFold DB D4Z9E2


Host bacterium

ID   22423 GenBank   NZ_CP005093
Plasmid name   pTK9 Incompatibility group   -
Plasmid size   5391 bp Coordinate of oriT [Strand]   3439..3471 [+]
Host baterium   Sphingobium sp. TKS

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -