Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   121995
Name   oriT_pTK8 in_silico
Organism   Sphingobium sp. TKS
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP005092 (4613..4645 [+], 33 nt)
oriT length   33 nt
IRs (inverted repeats)      4..9, 14..19  (GCAAAC..GTTTGC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 33 nt

>oriT_pTK8
CACGCAAACGCAAGTTTGCATAAGTGCGCCCTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   13876 GenBank   WP_237230258
Name   mobQ_K426_RS29920_pTK8 insolico UniProt ID   _
Length   410 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 410 a.a.        Molecular weight: 45930.07 Da        Isoelectric Point: 8.7780

>WP_237230258.1 MobQ family relaxase [Sphingobium sp. TKS]
MASKGAAMASFHLAVKTIGRSAGRSATAAAAYRAGVEITDERTGLVHDYTRKQGVEHNALVMPADAPAWA
SDRAALWNAAEQAETRKNSTVAREYEIALPAELSAEARCELALGLAREISERHGVAVDVAIHAPGREGDH
RNHHAHLLTTTRRIGPEGLGEKTRELDQKTSGEVERWRGRWAEMQNAALERANVPERVDHRSHQRRGIEQ
EATVHMGPSATAMERRAEHQAMREGRDYEPVTMVGQHNAGVIEQRGLRQYIERGTEWLRDAGQRISGRLH
EFAATLSGAVDRDRRDAAEAQRQERFAAERARDQAQERQQMREREKVAEKFKTIAGKREAGAHGYGDHNS
DWKATPEALRKAVDAYNGANQHTKDLYIERIQREPQMARAVGQLFHERELALQRDRGMSL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(24-226)


  Protein structure



No available structure.




Host bacterium

ID   22422 GenBank   NZ_CP005092
Plasmid name   pTK8 Incompatibility group   -
Plasmid size   7223 bp Coordinate of oriT [Strand]   4613..4645 [+]
Host baterium   Sphingobium sp. TKS

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -