Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   121956
Name   oriT_pK205-4b-C in_silico
Organism   Enterococcus dispar strain K205-4b
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP116586 (5041..5080 [+], 40 nt)
oriT length   40 nt
IRs (inverted repeats)      2..9, 11..18  (ACCTTATA..TATAAGGT)
Location of nic site      26..27
Conserved sequence flanking the
  nic site    		  GTGTGTTATA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 40 nt

>oriT_pK205-4b-C
CACCTTATATTATAAGGTATAGTGTGTTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   13837 GenBank   WP_249464186
Name   mobV_PML78_RS13500_pK205-4b-C insolico UniProt ID   _
Length   407 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 407 a.a.        Molecular weight: 47628.79 Da        Isoelectric Point: 9.1467

>WP_249464186.1 MULTISPECIES: MobV family relaxase [Enterococcus]
MSMIVARMQKMKAENLIGIGNHNQRKTKNHSNPDIDTSLSELNYDLVNRTDNYKKDIENFINENKSTTRA
VRKDAVLINEWIITSDRKFFENLSDEDTKKFFITAKEYFEENFGEENIRYATVHLDESTPHLHMGIVPFD
KDKKLSAKRVFNREALRNVQEDLPKLLQEKGFDIERGLEGSDRKNLTVPEFKKLKEAEKEIERAIDRKKN
ELKAYTQENNISNKIDVNITRETKDVKVPSGEKFLGHEFTKTVQKTTGNLIISETDFKKLDQALKHGRIK
EEQLNKILNTDIHKENKELKDTVKELKAKTNDVIDDYNSLVKDYNSLIDENKGLRATISDLREEIRLIYI
STKEFLKDRTSDLQTFKSAFKDLIHTITNKIGNSSLENNFQKEYRKETRQQSRGMER

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-193)


  Protein structure



No available structure.




Host bacterium

ID   22383 GenBank   NZ_CP116586
Plasmid name   pK205-4b-C Incompatibility group   -
Plasmid size   8638 bp Coordinate of oriT [Strand]   5041..5080 [+]
Host baterium   Enterococcus dispar strain K205-4b

Cargo genes

Drug resistance gene   optrA
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -