Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   121955
Name   oriT_pK205-4b-A in_silico
Organism   Enterococcus dispar strain K205-4b
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP116584 (36514..36551 [-], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      7..12, 16..21  (AGTAAC..GTTACT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_pK205-4b-A
ATACGAAGTAACGAAGTTACTGCGTATAAGTGCGCCCT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   13836 GenBank   WP_334312180
Name   mobQ_PML78_RS13210_pK205-4b-A insolico UniProt ID   _
Length   661 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 661 a.a.        Molecular weight: 77314.31 Da        Isoelectric Point: 9.3312

>WP_334312180.1 MobQ family relaxase [Enterococcus dispar]
MAIFHLSMTIAKREGGKRSLIAMASYRSGEKLYSELYEKTNLYNHRTVKPEAFILKPDYVPNEFLDRQTL
WNKMELAEKSPNAQLCRELNVALPIELNNSDQKMLIEDFVKDNFVSEGMIADVAIHRDDENNPHAHIMLT
MREVDSEGNILNKSHRIPKLDEHGNQIYNEKGQRVTVSIKTNDWDRKSLVSEIRKDWADKVNQYLKDRNI
DQQITEKSHAELGKKELPTIHEGFYSKKLEDKGVISELKRKNLEIQSYNDVLSELDKLENQEKVLKQDQN
FTLKFEKTFSPLEKGELKNLSKELKIFVNDENIDKRISELKRWENSLIFNNKMEIQKQRLMLSKISSERD
MLTKANEILDKQAERFFKKSYPSLNIDKFSNHEVRAMVNETIFRKQLLNKDQLAEVIYNERVVEKEESKK
IFKEKPFQTSRYIDSKIKQVEDSITKENNPERKEILSIKKEKLIGIKQGLIEYVQSEVERKFDKNVSIDS
VIEGEMLLAKSDYYKTTDFSKVEGVARFSSEEINSMLEQSKGFLTNIQTVKIPNDCQGVFFVQDIMKYID
ELSPLAKHNLKKVVNRNAYLPDSDKLELSKEIENTNKDQSQELGKNEPEKNEVSVKMFQFAKSINRLLSG
NQPQKKRNLDKLIKQTKAKKNQSLQRNIPLR

  Protein domains


Predicted by InterproScan.

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(289-394)

MobA/MobL family (MobA_MobL)

(18-242)


  Protein structure



No available structure.




Host bacterium

ID   22382 GenBank   NZ_CP116584
Plasmid name   pK205-4b-A Incompatibility group   -
Plasmid size   38374 bp Coordinate of oriT [Strand]   36514..36551 [-]
Host baterium   Enterococcus dispar strain K205-4b

Cargo genes

Drug resistance gene   erm(B)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -