Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   121953
Name   oriT_pK80-15b-C in_silico
Organism   Enterococcus faecium strain K80-15b
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP116552 (12456..12493 [-], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      14..22, 29..37  (TAAAGTATA..TATACTTTA)
 2..8, 13..19  (ACTTTAT..ATAAAGT)
Location of nic site      27..28
Conserved sequence flanking the
  nic site  
 
 GTGTGTTATA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_pK80-15b-C
CACTTTATGAATATAAAGTATAGTGTGTTATACTTTAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


T4CP


ID   16199 GenBank   WP_159373489
Name   t4cp2_PML85_RS14130_pK80-15b-C insolico UniProt ID   _
Length   508 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 508 a.a.        Molecular weight: 56880.09 Da        Isoelectric Point: 4.6922

>WP_159373489.1 MULTISPECIES: VirD4-like conjugal transfer protein, CD1115 family [Enterococcus]
MNGTILGMVDKQIIYQNNSTKPNRNVFVVGGPGSYKTQSVVITNLFNETQNSIVVTDPKGELYEKTAGVK
VAQGYQVHVVNFANMIHSDRYNPFDYIDRDIQAENVATKIVQSENKEGKKDVWFSTQRQLLKALILFVMN
HREPKQRNLAGVTNVLQKFDVEPGEDETDSPLDSLFLDLDMSDPARRAYELGFKKAKGEMKASIIESLLA
TVSKFVDAEVADFTGFSDFDLKDIGSTKTVLYVIIPVMDDTYESFINLFFSQLFDELYKLASDHGAKLPV
SVDFILDEFVNLGKFPKYEEFLATCRGYGIGVTTICQTLTQLQALYGKEKAESILGNHAVKICLNAANDV
TAKYFSDLLGKSTVKVETGSESTSRSKETSTSKSDSYSYTSRSLMTSDEIMRMPDTQSLLIFSNQRPIKA
TKAFQFKLFPGADHLVELKQNDYTSEPTGSQLTKFNEANEKWEAELAKAKATKAKNDVKPEEEEDMQDEM
DLAVAKQQASSENEDVDF

  Protein domains


Predicted by InterproScan.

(24-444)

  Protein structure



No available structure.




Host bacterium


ID   22380 GenBank   NZ_CP116552
Plasmid name   pK80-15b-C Incompatibility group   -
Plasmid size   38387 bp Coordinate of oriT [Strand]   12456..12493 [-]
Host baterium   Enterococcus faecium strain K80-15b

Cargo genes


Drug resistance gene   poxtA, fexB, tet(L), tet(M)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -