Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   121944
Name   oriT_USDA-20A|unnamed1 in_silico
Organism   Streptococcus dysgalactiae strain USDA-20A
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP116462 (211..347 [+], 137 nt)
oriT length   137 nt
IRs (inverted repeats)      33..38, 46..51  (TGAAAA..TTTTCA)
 21..28, 42..49  (AAAAGGGG..CCCCTTTT)
Location of nic site      104..105
Conserved sequence flanking the
  nic site    		  GCTTGCAGTA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 137 nt

>oriT_USDA-20A|unnamed1
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAAATGCCCCCTTTTCAAGCAATATTGTAATACAAGAACGAAGTGATTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATGGTCTATTTTGTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   13832 GenBank   WP_272076009
Name   Relaxase_PMN45_RS11970_USDA-20A|unnamed1 insolico UniProt ID   _
Length   410 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 410 a.a.        Molecular weight: 47542.02 Da        Isoelectric Point: 7.0859

>WP_272076009.1 relaxase/mobilization nuclease domain-containing protein [Streptococcus dysgalactiae]
MATIAKISNGASAASALNYALGQDRPMHEKTEQWLQDHQLERPVELTNCRAVAVGGTNGIDPFIAKEQFD
VIRQLHNQTKESNQVLRITQSFALDELNPKVQKDWQKANDLGVELAENLYPNHQSAVYTHLDGKNHVLHN
HIIVNKVNLETGKKLREQKGESVQRAREMNDRLASRENWHILEPPKERQTETEKELIAKNEYSYMDDLRE
RINKSLQDVSVSSYETFKERLSDNGVILSERGQTFSYAFLDANNKQRRARETRLGSDFGRETILHELENR
ARQNEFSAVEQGEPAITPLERDTQQRESEIVSLEQAIEPRKSEALKRESTINRFIDTIKQFAGRVPELTQ
RVTRKLKQTKEKILDDFERRFSKDMKNDEQEQQKSLEKQANRDVQSEKKPTKDHDRGMSR

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(9-280)


  Protein structure



No available structure.




Host bacterium

ID   22371 GenBank   NZ_CP116462
Plasmid name   USDA-20A|unnamed1 Incompatibility group   -
Plasmid size   15715 bp Coordinate of oriT [Strand]   211..347 [+]
Host baterium   Streptococcus dysgalactiae strain USDA-20A

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -