Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   121685
Name   oriT_p103_48kb in_silico
Organism   Enterococcus faecium strain Dallas 103
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP066586 (17926..17968 [+], 43 nt)
oriT length   43 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 43 nt

>oriT_p103_48kb
AATATCGCAACATGGGCCCATGTTGCTCTGCTCGCAAAAGAAA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   13682 GenBank   WP_199021957
Name   Relaxase_JCP83_RS14975_p103_48kb insolico UniProt ID   _
Length   304 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 304 a.a.        Molecular weight: 35740.51 Da        Isoelectric Point: 9.8074

>WP_199021957.1 relaxase/mobilization nuclease domain-containing protein [Enterococcus faecium]
MATVKVSRTTSCSRAINYAEPRATVKTGINCDIDYAKSEMKQIRMLYGKDDRVQAHLLIQSFRPGEITAE
KANQLGAEYAKKIAPDHQIAIYTHTDKDHIHNHIVINSVNLETGKKFQAHGQAFLNKCYDLNDEICLEHD
LTITERGKKPEKRTMSEIKLKEKNEPVWKDEIRFAIDQTMKNKKTRTYNQFCDSLKTFGIHCLNRGKNFT
YELIHKKKKVRSNKLGKDYEKETILHELDRRERTYNQQRTNELRRARASIRETAEEVRREQRTLTPEQPE
IRPTRRNHEQHVERGTDHQQELSL

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(9-241)


  Protein structure



No available structure.




Host bacterium

ID   22112 GenBank   NZ_CP066586
Plasmid name   p103_48kb Incompatibility group   -
Plasmid size   48758 bp Coordinate of oriT [Strand]   17926..17968 [+]
Host baterium   Enterococcus faecium strain Dallas 103

Cargo genes

Drug resistance gene   erm(B), ant(6)-Ia, aph(3')-III, VanHAX
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA21