Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   121643
Name   oriT_SHOU-BC01|p1 in_silico
Organism   Bacillus paranthracis strain SHOU-BC01
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP089744 (1972..2010 [+], 39 nt)
oriT length   39 nt
IRs (inverted repeats)      1..6, 11..16  (CTTTAC..GTAAAG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 39 nt

>oriT_SHOU-BC01|p1
CTTTACGATAGTAAAGTATAGTGTGCTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   13652 GenBank   WP_046946864
Name   mobV_LU294_RS26835_SHOU-BC01|p1 insolico UniProt ID   _
Length   408 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 408 a.a.        Molecular weight: 47881.59 Da        Isoelectric Point: 9.6396

>WP_046946864.1 MULTISPECIES: MobV family relaxase [Bacillus cereus group]
MSYAICRMQKFKMRDVKGIQIHNQREKESHTNHDIESERTHLNYDLHNDGHIDYLKTVKDKIEQNVETNR
AIRKDAVVMCEFVVTSDREFFDVLDMVDPAQQKVFFKEAYSFLKDRYGEQNIVHAAVHLDEKTPHMHVGM
VPVTGENKLSAKQIFNRKELVSLQDDFHAHMVEKGFYLERGVSSDKKHVEMRKFKAMTAKEEINALEKEI
GQCLQKKEVVNKQMEQLESRLNQLQNAVKSTNKVDKIEVKHKGGILRSKTVEMSVEDFEELKTKAKASEA
FKRENTTLHRKNEALQASNTDLHTTVKRLEKENERLKPYKGKYERLGKLFDEMNKFYEKFIPKEVSKFHE
IIGFCKRKVNASINRFSSLRYSEKALNENEKKGYEAASKFLATQQTQQRKERGNEREL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-196)


  Protein structure



No available structure.




Host bacterium

ID   22070 GenBank   NZ_CP089744
Plasmid name   SHOU-BC01|p1 Incompatibility group   -
Plasmid size   6042 bp Coordinate of oriT [Strand]   1972..2010 [+]
Host baterium   Bacillus paranthracis strain SHOU-BC01

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -