Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   121619
Name   oriT_FDAARGOS_1064|unnamed1 in_silico
Organism   Lactococcus lactis strain FDAARGOS_1064
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP065985 (13252..13387 [+], 136 nt)
oriT length   136 nt
IRs (inverted repeats)      83..89, 91..97  (TATTACA..TGTAATA)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 136 nt

>oriT_FDAARGOS_1064|unnamed1
ACACAATCCAAAGGGGATAAAAGTGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGATTTGTATTACAATGTAATAGCTTACCAGTATTTATGGTTTTATATTTTCTATTTTGTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   13638 GenBank   WP_014570287
Name   Relaxase_I6I21_RS12065_FDAARGOS_1064|unnamed1 insolico UniProt ID   _
Length   505 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 505 a.a.        Molecular weight: 59229.00 Da        Isoelectric Point: 7.3429

>WP_014570287.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Lactococcus]
MTVIYMPKQSNGTVHSSKDLNQLIDYVMNPEKTNDFEYVSGQNILDIHSTCDEMLATRTMANALKNKPQK
NEIFGYHFVQSFSPDDHLTPEQVHEIGLKTMKEYLGSSAEFIIATHTDKPHLHNHIVLNATDPLTLNKFQ
QNKNDLERLKEISDKISKEYGCKIIVRPEQKLGNSHKNYLVYLAKNSYRKEIKNKLEFLMNHSHTWEDFK
TKARALNLKVDDTKKYTTYLLEGSEQTKKIRDRSLKNDKFLKENLKERIEKNTIGYSVDEVVKLWKDKES
IQEKNQEKEISILVEDWQIEKETENFLYVTIDTALDKEATIKIPARCVDKLENGDYQVFIKNKDRFSYLD
KKSPANNKIMYGTTVAKNLQRQSGNVPLYSDNANIKLKQVFHEFDFLISQGLGFDRSFETIGKDLKATYQ
ETEKQLDKLDTKIIEYVEQNKSLDYVDTTIRDTIKNLKLERDDLRDTLYKVDKNIQYYQKSEQRLEAYQK
NQSPKNKARDDDFEI

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(17-261)


  Protein structure



No available structure.




Host bacterium

ID   22046 GenBank   NZ_CP065985
Plasmid name   FDAARGOS_1064|unnamed1 Incompatibility group   -
Plasmid size   31275 bp Coordinate of oriT [Strand]   13252..13387 [+]
Host baterium   Lactococcus lactis strain FDAARGOS_1064

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -