Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 121616
• Name: oriT_pSN35N-2
• Organism: Lactiplantibacillus plantarum strain SN35N
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_AP018407 (10213..10233 [-], 21 nt)
• oriT length: 21 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 21 nt

>oriT_pSN35N-2
AGTGGGGTGTAAGTGCGCATT

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobQ_EL347_RS16345_pSN35N-2

• ID: 13635
• GenBank: WP_071665498
• Name: mobQ_EL347_RS16345_pSN35N-2
• UniProt ID: _
• Length: 687 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 687 a.a.
• Molecular weight: 80395.08 Da
• Isoelectric Point: 9.4536

>WP_071665498.1 MULTISPECIES: MobQ family relaxase [Lactiplantibacillus]
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDKEGRHYFYARSIMPESFILTPKNSPEWASDREQLWN
EVEKKDRKSNSRYAKEFNVALPVELSESEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNR
PFNSDGTWGIKSKKQYILDDNGNKTYTGTSKYPKSRKILMVDWDKKEKITEWRHNWAASVNQALEQKNIP
DRISEKSFVEQGIADTPMQHEGINSKRHERKAFNQQVKNYRKSKAGYKNMQEKVVNRGHLDSLSKHFSFN
EKKVVKELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVV
DRTTKKLYPELDFEQTTAAERRELIKETDSEQTIFKGSELNERLMNIRDDLLTRQLLTFTKRPYVGWKLL
MQQEKEVKIKLKYTLMIHDDSLESLEHVDQGLLEKYSPTEQQKITRAVKDLRAIMAVKQVIKTQYHEVLK
RAFPKGDLDELPMTKQEQAYTAVMYYDPVLKPCQAETIEQWQANPPQVFSPQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFFGECKADPTIKNSQIEKIQKQLKGQQAKDDQYRKANMGHYQPLNYKPVSPDY
YLKTAFSDAIMTVLYARDEDYQRQKQERGLKETEWEMTKKQRQHQTRNRHEDGGMHL

Protein domains

Predicted by InterproScan.

• Nicking enzyme C-terminal middle helical domain (NES_C_h) (276-384)

• MobA/MobL family (MobA_MobL) (17-241)

Protein structure

No available structure.

Host bacterium

• ID: 22043
• GenBank: NZ_AP018407
• Plasmid name: pSN35N-2
• Incompatibility group: -
• Plasmid size: 23742 bp
• Coordinate of oriT [Strand]: 10213..10233 [-]
• Host baterium: Lactiplantibacillus plantarum strain SN35N

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -