Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 121609 |
Name | oriT_2014C-4356|unnamed4 |
Organism | Escherichia albertii strain 2014C-4356 |
Sequence Completeness | - |
NCBI accession of oriT (coordinates [strand]) | NZ_CP024286 (78545..78894 [-], 350 nt) |
oriT length | 350 nt |
IRs (inverted repeats) | 254..260, 269..275 (CCGCTAG..CTAGCGG) 190..196, 204..210 (TATAAAA..TTTTATA) 195..200, 202..207 (AAAACA..TGTTTT) 127..132, 146..151 (CGGTGC..GCACCG) 104..109, 111..116 (TAAATC..GATTTA) 38..45, 48..55 (GCAAAAAC..GTTTTTGC) 2..9, 14..21 (TTGGTGGT..ACCACCAA) |
Location of nic site | _ |
Conserved sequence flanking the nic site |
_ |
Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 350 nt
GTTGGTGGTTCTCACCACCAAAAGCACCACACCCCACGCAAAAACAAGTTTTTGCTGATTTGATTTTAATATCATATGCTTATATTCATGAATTTATATTGTTTAAATCAGATTTATTTGAAACAGCGGTGCAGGCGCGGCTATGGCACCGTGTCTGCACCGCTTTGTAGGGGTGGTACTGACTATTTTTATAAAAAACATTGTTTTATATTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTTATAGGATACCGCTAGGGGCGCTGCTAGCGGCGCGTTCCTGTTTCCATTGTGAATTTTAGTGTTTCGAAATTAACTTTATTTTATGTTTAAAAAAGGTAATCTCTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileRelaxase
ID | 13629 | GenBank | WP_099588238 |
Name | traI_CCF14_RS26705_2014C-4356|unnamed4 | UniProt ID | _ |
Length | 1756 a.a. | PDB ID | |
Note | Predicted by oriTfinder 2.0 |
Relaxase protein sequence
Download Length: 1756 a.a. Molecular weight: 191871.81 Da Isoelectric Point: 6.1000
MLSISVIKSAGSAGNYYTDKDNYYVLGSMEERWAGKGAEQLGLRGSVDKDVFTRLLEGKLPDGSDLSRMQ
DGSNKHRPGYDLTFSAPKSVSVMAMLGGDKRLIDAHNQAVDFAVRQVEALASTRVMTDGQSETVLTGNLV
MALFNHDTSRDQEPQLHTHAVVANVTQHNGERKTLSSDKVGKTGFIENVYANQIAFGRLYREKLKEQVEA
LGYETEVVGKHGMWEMPGVPVEAFSSRSQAIREAVGEGASLKSRDVAALDTRKSKQHVDPEIKMTEWMQT
LKETGFDIQAYRDAAEQRAETRTQAPGPASPDGPDVQQAVTHAIAGLSERKVQFTYTDVLARTVGILPPE
EGVIERARAGIDEAISREQLIPLDREKGLFTSGIHVLDELSVRALSRDIMKQNRVTVHPEKSVPRTAGYS
DAVSVLAQDRPSLAIVSGLGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNLKQDERLSGELITGR
RQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLITDSGQRTGTGSALMAMKDAGVNAYRW
QGGEQRPATIISEPDRHVRYARLAGDFAASVKAGKESVAQVSGVREQAILTQAIRSELKTQGVLGHPEVT
MTALSPVWLDSRSRYLRDMYRPGMVMEQWNPETRSHDRYVIDRVTAQSHSLTLRDAQGETQVVRISSLDS
SWSLFRPEKMPVADGERLRVTGKIPGLRVSGGDRLQVASVSEDAMTVVVPGRAEPATLPVADSPFTALKL
ESGWVETPGHSVSDSAKVFASVTQMAMDNATLNGLARSGRDVRLYSSLDETRTAEKLARHPSFTVVSEQI
KARAGETSLETAISHQKSALHTPAQQAIHLALPVLESKNLAFSMVDLLTEAKSFAAEGTSFVDLGREIDA
QIKRGDLLHVDVAKGYGTDLLVSRASYEAEKSILRHILEGKEAVTPLMERVPGELMEKLTSGQRAATRMI
LETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSAGVDAQTLASFLHDT
QLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSA
ADVAIMKEIVRQTPELREAVYSLINRDVERALSGLESVKPSQVPRLEGAWAPEHSVMEFSHSQEAKLAEA
QQKAMQNGGAFPDVPMTLYEAIVRDYTGRTPEAREQTLIVTHLNEDRRVLNCMIHDAREKAGELGKEQVM
VPVLNTANIRDGELRRLSTWETHRDALALVDNVYHWIAGISKDDGLITLQDAEGNTRLISPREAVAEGVT
LYTPDTIRVGTGDRMRFTKSDRECGYVANSVWTVTAVSGDSVTLSDGQQTRVIRPARERAEQHIDLAYAI
TAHGAQGASETFAIALEGTEGSRKLMAGFESAYVALSRMKQHVQVYTDNRQGWTDAINNAVQKGTAHDVL
EPKSDREVMNAERLFSTARELRDVAAGRAVLRQAGLAGGDSPARFIAPGRKYPQPYVALPAFDRNGKSAG
IWLNPLTTDDGNGLRGFSGEGRVKGSGDAQFVALQGSRNGESLLADNMQDGVRIARDNPDSGVVVRIAGE
GRPWNPGAITGGRVWGDIPDNSVQPGAGNGEPVTAEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLP
DGRTEQAVREIAGQERERAVTSEREAALPESVLREPQREREAVREVARENLLQERLQQMERDMVRDLQKE
KTLGGD
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
ID | 7514 | GenBank | WP_019842734 |
Name | WP_019842734_2014C-4356|unnamed4 | UniProt ID | _ |
Length | 127 a.a. | PDB ID | _ |
Note | Predicted by oriTfinder 2.0 |
Auxiliary protein sequence
Download Length: 127 a.a. Molecular weight: 14613.65 Da Isoelectric Point: 4.8742
MAKVNLYISNDAYEKINTIIEKRRQEGAREKDVSFSATASMLLELGLRVYEVQMERKESAFNQIEFNKVL
LECVVKTQSSVAKILGIESLSPHVSGNPKFEYANMVEDIREKVSSEMERFFPKNDEE
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
ID | 15931 | GenBank | WP_099588239 |
Name | traD_CCF14_RS26710_2014C-4356|unnamed4 | UniProt ID | _ |
Length | 717 a.a. | PDB ID | _ |
Note | Predicted by oriTfinder 2.0 |
T4CP protein sequence
Download Length: 717 a.a. Molecular weight: 81429.91 Da Isoelectric Point: 5.1674
MSFNAKDMTQGGQIASMRIRMFSQIANIMLYCLFIFFWILVGLVLWVKISWQTFVNGCIYWWCTTLEGMR
DLIKSQPVYEIQYYGKTFRMNAAQVLHDKYMIWCGEQLWSAFVLATVVALVICLITFFVVSWILGRQGKQ
QSENEVTGGRQLTDNPKDVARMLKKDGKDSDIRIGDLPIIRDSEIQNFCLHGTVGAGKSEVIRRLANYAR
QRGDMVVIYDRSGEFVKSYYDPSIDKILNPLDARCAAWDLWKECLTQPDFDNTANTLIPMGTKEDPFWQG
SGRTIFAEAAYLMRNDPNRSYSKLVDTLLSIRIEKLRTFLRNSPAANLVEEKIEKTAISIRAVLTNYVKA
IRYLQGIEHNGEPFTIRDWMRGVREDQKNGWLFISSNADTHASLKPVISMWLSIAIRGLLAMGENRNRRV
WFFCDELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGEKAAATLFDVLNTRAFFRSPSHKIA
EFAAGEIGEKEHLKASEQYSYGADPVRDGVSTGKDMERQTLVSYSDIQSLPDLTCYVTLPGPYPAVKLSL
KYQARPKVAPEFIPRDINPEMENRLSAVLAAREAEGRQMASLFEPDVPEVVSGEDVTQAEQPQQPVSPAI
NDKKSDSGVNVPAGGIEQKLKMKSEEEMEQQLPPGISESGEVVDMAAYEAWQQENHPDTQQQMQRREEVN
INVHRERGEDVEPGDDF
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
ID | 15932 | GenBank | WP_099588248 |
Name | traC_CCF14_RS26790_2014C-4356|unnamed4 | UniProt ID | _ |
Length | 857 a.a. | PDB ID | _ |
Note | Predicted by oriTfinder 2.0 |
T4CP protein sequence
Download Length: 857 a.a. Molecular weight: 97436.02 Da Isoelectric Point: 6.4106
MKLPDESAKANEVLGEMSFPQFSRLLPYRDYNQESGLFMNDTTMGFMLEAIPINGANESIVEALDHMLRT
KLPRGIPLCIHLMSSQLVGDRIEYGLREFSWSGEQAERFNAITRAYYMKAAATQFPLPEGMNLPLTLRHY
RVFISYCSPSKKKSRADILEMENLVKIIRASLQGASITTQTVDAQAFIDIVGEMINHNPDSLYPKRRQLD
PYSDLNYQCVEDSFDLKVRADYLTLGLRENGRNSTARILNFHLARNPEIAFLWNMADNYSNLLNPELSIS
CPFILTLTLVVEDQVKTHSEANLKYMDLEKKSKTSYAKWFPSVEKEAKEWGELRQRLGSGQSSVVSYFLN
ITAFCKDNNETALEVEQDILNSFRKNGFELISPRFNHMRNFLTCLPFMAGKGLFKQLKEAGVVQRAESFN
VANLMPLVADNPLTPAGLLAPTYRNQLAFIDIFFRGMNNTNYNMAVCGTSGAGKTGLIQPLIRSVLDSGG
FAVVFDMGDGYKSLCENMGGVYLDGETLRFNPFANITDIDQSAERVRDQLSVMASPNGNLDEVHEGLLLQ
AVRASWLAKKNRARIDDVVDFLKNARDNDQYVESPTIRSRLDEMIVLLDQYTAGGTYGRYFNSDEPSLRD
DAKMVVLELGGLEDRPSLLVAVMFSLIIYIENRMYRTPRNLKKLNVIDEGWRLLDFKNHKVGEFIEKGYR
TARRHTGAYITITQNIVDFDSDKASSAARAAWGNSSYKIILKQSAKEFAKYNQLYPDQFLPLQRDMIGKF
GAAKDQWFSSFLLQVENHSSWHRLFVDPLSRAMYSSDGPDFEFVQQKRKEGLSIHEAVWQLAWKKSGPEM
ASLEAWLEEHEKYRSVA
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4SS
T4SS were predicted by using oriTfinder2.
Region 1: 50512..76565
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
CCF14_RS26710 | 50512..52665 | - | 2154 | WP_099588239 | type IV conjugative transfer system coupling protein TraD | virb4 |
CCF14_RS26715 | 53084..53677 | - | 594 | WP_232529617 | hypothetical protein | - |
CCF14_RS26720 | 53887..54198 | + | 312 | WP_019842747 | heavy metal-binding domain-containing protein | - |
CCF14_RS26725 | 54201..57020 | - | 2820 | WP_099588241 | conjugal transfer mating-pair stabilization protein TraG | traG |
CCF14_RS26730 | 57017..58342 | - | 1326 | WP_019842713 | conjugal transfer pilus assembly protein TraH | traH |
CCF14_RS26735 | 58823..59353 | - | 531 | WP_089633479 | hypothetical protein | - |
CCF14_RS26740 | 59368..59910 | - | 543 | WP_099588242 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | traF |
CCF14_RS26745 | 59897..60181 | - | 285 | WP_000624109 | type-F conjugative transfer system pilin chaperone TraQ | - |
CCF14_RS26750 | 60299..60646 | - | 348 | WP_019842709 | conjugal transfer protein TrbA | - |
CCF14_RS26755 | 60662..61405 | - | 744 | WP_157760421 | type-F conjugative transfer system pilin assembly protein TraF | traF |
CCF14_RS26760 | 61398..61655 | - | 258 | WP_000864325 | conjugal transfer protein TrbE | - |
CCF14_RS26765 | 61682..63490 | - | 1809 | WP_099588244 | type-F conjugative transfer system mating-pair stabilization protein TraN | traN |
CCF14_RS26770 | 63487..64125 | - | 639 | WP_099588245 | type-F conjugative transfer system pilin assembly protein TrbC | trbC |
CCF14_RS26775 | 64134..65126 | - | 993 | WP_000830839 | conjugal transfer pilus assembly protein TraU | traU |
CCF14_RS26780 | 65123..65755 | - | 633 | WP_099588246 | type-F conjugative transfer system protein TraW | traW |
CCF14_RS26785 | 65752..66138 | - | 387 | WP_099588247 | type-F conjugative transfer system protein TrbI | - |
CCF14_RS26790 | 66135..68708 | - | 2574 | WP_099588248 | type IV secretion system protein TraC | virb4 |
CCF14_RS26795 | 68761..70332 | - | 1572 | WP_000381395 | IS66-like element ISCro1 family transposase | - |
CCF14_RS26800 | 70352..70699 | - | 348 | WP_000624622 | IS66 family insertion sequence element accessory protein TnpB | - |
CCF14_RS26805 | 70699..71376 | - | 678 | WP_001682408 | IS66-like element accessory protein TnpA | - |
CCF14_RS26810 | 71629..71850 | - | 222 | WP_001278690 | conjugal transfer protein TraR | - |
CCF14_RS26815 | 71985..72500 | - | 516 | WP_000809905 | type IV conjugative transfer system lipoprotein TraV | traV |
CCF14_RS26820 | 72497..72748 | - | 252 | WP_077543400 | conjugal transfer protein TrbG | - |
CCF14_RS26825 | 72760..72957 | - | 198 | WP_019842703 | conjugal transfer protein TrbD | - |
CCF14_RS26830 | 72944..73534 | - | 591 | WP_099588249 | conjugal transfer pilus-stabilizing protein TraP | - |
CCF14_RS26835 | 73524..74951 | - | 1428 | WP_099588250 | F-type conjugal transfer pilus assembly protein TraB | traB |
CCF14_RS26840 | 74951..75679 | - | 729 | WP_019842729 | type-F conjugative transfer system secretin TraK | traK |
CCF14_RS26845 | 75666..76232 | - | 567 | WP_099588205 | type IV conjugative transfer system protein TraE | traE |
CCF14_RS26850 | 76254..76565 | - | 312 | WP_000012106 | type IV conjugative transfer system protein TraL | traL |
CCF14_RS26855 | 76580..76939 | - | 360 | WP_019842731 | type IV conjugative transfer system pilin TraA | - |
CCF14_RS26860 | 76973..77200 | - | 228 | WP_019842732 | conjugal transfer relaxosome protein TraY | - |
CCF14_RS26865 | 77319..77966 | - | 648 | WP_099588251 | transcriptional regulator TraJ family protein | - |
CCF14_RS26870 | 78161..78544 | - | 384 | WP_019842734 | conjugal transfer relaxosome DNA-binding protein TraM | - |
CCF14_RS26875 | 78820..79467 | + | 648 | WP_157760422 | transglycosylase SLT domain-containing protein | - |
CCF14_RS26880 | 79762..80583 | - | 822 | WP_157760423 | DUF932 domain-containing protein | - |
CCF14_RS28920 | 80702..80987 | - | 286 | Protein_78 | hypothetical protein | - |
CCF14_RS28925 | 81005..81298 | + | 294 | Protein_79 | hypothetical protein | - |
Host bacterium
ID | 22036 | GenBank | NZ_CP024286 |
Plasmid name | 2014C-4356|unnamed4 | Incompatibility group | IncFIB |
Plasmid size | 113727 bp | Coordinate of oriT [Strand] | 78545..78894 [-] |
Host baterium | Escherichia albertii strain 2014C-4356 |
Cargo genes
Drug resistance gene | - |
Virulence gene | faeJ, faeH, faeF, faeE, faeD, faeC, vat, papD, papC |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | - |