Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 121605 |
| Name | oriT_pDY25-G  |
| Organism | Pacificitalea manganoxidans strain DY25 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP021411 (2555..2574 [-], 20 nt) |
| oriT length | 20 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 20 nt
>oriT_pDY25-G
GTTTGCATAAGTGCGCCCTT
GTTTGCATAAGTGCGCCCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 13626 | GenBank | WP_097374660 |
| Name | mobQ_CBW24_RS18185_pDY25-G |
UniProt ID | _ |
| Length | 428 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 428 a.a. Molecular weight: 48619.79 Da Isoelectric Point: 6.7940
>WP_097374660.1 MobQ family relaxase [Pacificitalea manganoxidans]
MASYHLSVKTIKRSAGRSATAAAAYRVGERIECQREGRVHDYTRKQGIEETFILTPKDAPDWASDRSRLW
NEAEASETRRNSVTAREWELALPSEISAEARSQITRDFAQELVSRYGVAVDVAIHAPHREGDQRNHHAHV
LTSTRKLEAGGFTAKTRVLDSAKTGGVEIEQMRGLWAELQNRALERVGEVERVDHRSLEKQRETALDRGD
KLTAEELDRDPELKLGPAANSMERRAKVMAERQGREYVPVTERGAVVHAARQARAAFREMRERLDIARET
YGIEREAGQGRISAGLAALRASTSKERGERNPEDFRERLSQVVGRSRDQDDTPKPEGRNYARERLKEIME
KDAGRDGQAAVHKLDGHSEYDLGEDTGRDGRKPSVNERLKDVLNKPRERLEIEDERDQEKNQEVEKDRDI
DRDPGLSH
MASYHLSVKTIKRSAGRSATAAAAYRVGERIECQREGRVHDYTRKQGIEETFILTPKDAPDWASDRSRLW
NEAEASETRRNSVTAREWELALPSEISAEARSQITRDFAQELVSRYGVAVDVAIHAPHREGDQRNHHAHV
LTSTRKLEAGGFTAKTRVLDSAKTGGVEIEQMRGLWAELQNRALERVGEVERVDHRSLEKQRETALDRGD
KLTAEELDRDPELKLGPAANSMERRAKVMAERQGREYVPVTERGAVVHAARQARAAFREMRERLDIARET
YGIEREAGQGRISAGLAALRASTSKERGERNPEDFRERLSQVVGRSRDQDDTPKPEGRNYARERLKEIME
KDAGRDGQAAVHKLDGHSEYDLGEDTGRDGRKPSVNERLKDVLNKPRERLEIEDERDQEKNQEVEKDRDI
DRDPGLSH
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 15927 | GenBank | WP_097374658 |
| Name | t4cp2_CBW24_RS18175_pDY25-G |
UniProt ID | _ |
| Length | 556 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 556 a.a. Molecular weight: 61208.05 Da Isoelectric Point: 7.0249
>WP_097374658.1 type IV secretory system conjugative DNA transfer family protein [Pacificitalea manganoxidans]
MRSVMLVFGGLFRFFGRLIFTPILLGWMIGAVLFGAMLGSLVATPFIFAFFDQTPGESASQWLVFGPFMF
VGAVFGFQYWRMASGADAYFGLTGDSHGSARFANRKELKKLERGKGQEDRGLLIGRNPHTGRLLRYDGPA
HLITLAPTRAGKGVGTVIPNLLAAERSVLVIDPKGENARIAGEARRRFGTVHVLDPFEVSGHPSAAYNPL
DRLTPDSLDLGEDAASLTEALVMDPPGQVTEAHWNEEAKAILGGLIMFCVCHEDRDRRSLATVREYLTLP
PEKLRALLELMQDSDAAGGLIARAANRFLGKADREAASVLSNAQRHTHFLDSPRIAKCLARSDFAFSDLR
HRITSVFLVLPPNRMDAYSRWLRLLVSQALQDIARDAERPQGSSEGRSERLKAPTLFLLDEFAALGRLEA
VERAMGLMAGYGLQLWPILQDMSQLKDLYGDRAGTFIANAGVQQVFGVNDFETAKWLSQMIGQETAGFQT
DSFKPGDGPSFSNNLTGRDLLTPDEIMQLPPDRQLLRVQGQATAVAQKLRYYADPEFAGLFTPDAR
MRSVMLVFGGLFRFFGRLIFTPILLGWMIGAVLFGAMLGSLVATPFIFAFFDQTPGESASQWLVFGPFMF
VGAVFGFQYWRMASGADAYFGLTGDSHGSARFANRKELKKLERGKGQEDRGLLIGRNPHTGRLLRYDGPA
HLITLAPTRAGKGVGTVIPNLLAAERSVLVIDPKGENARIAGEARRRFGTVHVLDPFEVSGHPSAAYNPL
DRLTPDSLDLGEDAASLTEALVMDPPGQVTEAHWNEEAKAILGGLIMFCVCHEDRDRRSLATVREYLTLP
PEKLRALLELMQDSDAAGGLIARAANRFLGKADREAASVLSNAQRHTHFLDSPRIAKCLARSDFAFSDLR
HRITSVFLVLPPNRMDAYSRWLRLLVSQALQDIARDAERPQGSSEGRSERLKAPTLFLLDEFAALGRLEA
VERAMGLMAGYGLQLWPILQDMSQLKDLYGDRAGTFIANAGVQQVFGVNDFETAKWLSQMIGQETAGFQT
DSFKPGDGPSFSNNLTGRDLLTPDEIMQLPPDRQLLRVQGQATAVAQKLRYYADPEFAGLFTPDAR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 22032 | GenBank | NZ_CP021411 |
| Plasmid name | pDY25-G | Incompatibility group | - |
| Plasmid size | 16653 bp | Coordinate of oriT [Strand] | 2555..2574 [-] |
| Host baterium | Pacificitalea manganoxidans strain DY25 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |