Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 121547
• Name: oriT_pO23AP1
• Organism: Aeromonas salmonicida strain O23A
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP021655 (4010..4039 [+], 30 nt)
• oriT length: 30 nt
• IRs (inverted repeats): 14..19, 25..30 (AGTGTA..TACACT) 1..6, 10..15 (CTTTGC..GCAAAG)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 30 nt

>oriT_pO23AP1
CTTTGCGAAGCAAAGTGTAAGGAGTACACT

oriT secondary structure

Predicted by RNAfold.

Relaxase

Mob_Pre_O23A_RS22165_pO23AP1

• ID: 13585
• GenBank: WP_157666835
• Name: Mob_Pre_O23A_RS22165_pO23AP1
• UniProt ID: _
• Length: 288 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 288 a.a.
• Molecular weight: 32058.26 Da
• Isoelectric Point: 8.2723

>WP_157666835.1 plasmid recombination protein [Aeromonas salmonicida]
MYTKVEWDQGKLDTASALAKRKDAVVAIEFIIQVGNQTDWREEPTPECPEGPPIERDMGQFFTPFGEQVK
AWADKEFGPDNVVSIQLHMDESTPHFHVIATPIKDGKLQAKAWLDGGRKLAGIRRRCHATINEKIPCVYT
PNGLGGNPHRPDLRAGTAPAPTLIDKMSGHAKAQKLERENAALQEENAQLKQLLFSRQKGRYSADNVELA
QQATAEAQKAQSELQKAQGEVKRLTMALDSAQSVIARQGAEIDKLKGYNRTLSEQNNELEEKLQELQPKR
SRGKGMGR

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (17-134)

Protein structure

No available structure.

Host bacterium

• ID: 21974
• GenBank: NZ_CP021655
• Plasmid name: pO23AP1
• Incompatibility group: -
• Plasmid size: 4161 bp
• Coordinate of oriT [Strand]: 4010..4039 [+]
• Host baterium: Aeromonas salmonicida strain O23A

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -