Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   121534
Name   oriT_pEI-2234-3 in_silico
Organism   Edwardsiella ictaluri strain 2234
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP053782 (108518..108621 [+], 104 nt)
oriT length   104 nt
IRs (inverted repeats)      55..60, 73..78  (TGGAAT..ATTCCA)
 45..50, 55..60  (ATTCCA..TGGAAT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 104 nt

>oriT_pEI-2234-3
ATTTGACAAATTCCAAAGATAGGTTAGCCTAGTGACAACGTTAGATTCCAGTATTGGAATAATTAGGGTTACATTCCAGATAGATAATATTGTGGATAGGAATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


T4CP

ID   15861 GenBank   WP_193325698
Name   traC_F8538_RS17525_pEI-2234-3 insolico UniProt ID   _
Length   815 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 815 a.a.        Molecular weight: 92296.68 Da        Isoelectric Point: 6.1570

>WP_193325698.1 MULTISPECIES: type IV secretion system protein TraC [Enterobacterales]
MIITIKKKLAETLIPEHLRAAGIIPVLAYDEDDHVFLMDDLSAGFGFMCEPLCGADEKVQERMNGFLNQE
FPSKTTLQFVLFRSPDINQEMYRMMGLRDGFRHDLLTSVIKERINFLQYHTTDRIFAKTNKGIYDNGLIQ
DLKLFVTCKVPIKNSHPTESELQQLAQLRTKVESSLQTVGLRPRTMTAVNYIRIMSTILNWGPDASWRHD
AVGWELDKPICEQIFDYGTDVEVSKNGIRLGDYHAKVMSAKKLPDVFYFGDALTYAGDLSGGNSCIKENY
MVVTNVFFPEAESTKNTLERKRQFTVNQAYGPMLKFVPVLADKKESFDTLYESMKEGAKPVKITYSLILF
APTKERVEAAAMAARNIWRESRFELMEDKFVALPMFLNCLPFCTDRDAVRDLFRYKTMTTDQAAVVLPVF
GEWKGTGTYHAALISRNGQLMSLSLHDSNTNKNLVIAAESGSGKSFLTNELIFSYLSEGAQVWVIDAGKS
YQKLSEMLNGDFVHFEEGTHVCLNPFELIQNYDDEEDAIVSLVCAMASAKGLLDEWQISALKQVLSRLWE
EKGKDMKVDDIAERCLEDGNDLRLKDIGQQLYAFTSKGSYGKYFSRKNNVSFQNQFTVLELDELQGRKHL
RQVVLLQLIYQIQQEVFLGERSRKKVVIVDEAWDLLKEGEVSTFMEHAYRKFRKYGGSVVIATQSINDLY
ENAVGRAIAENSASMYLLGQTEETVESVKRSGRLSLSEGGFHTLRTVHTIQGVYSEIFIKSKSGMGVGRL
IVGDFQKLLYSTDPVDVNAIDQFVKQGLSIPEAIKAVMRSRQQAA

  Protein domains


Predicted by InterproScan.

TraC protein (TraC_F_IV)

(21-255)

TraG P-loop domain (P-loop_TraG)

(449-809)

Family of unknown function (DUF5934) (DUF5934)

(282-434)

  Protein structure



No available structure.




Host bacterium

ID   21961 GenBank   NZ_CP053782
Plasmid name   pEI-2234-3 Incompatibility group   IncA/C2
Plasmid size   109462 bp Coordinate of oriT [Strand]   108518..108621 [+]
Host baterium   Edwardsiella ictaluri strain 2234

Cargo genes

Drug resistance gene   tet(A), dfrA1, qacE, sul1, floR, sul2, qnrS5
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -