Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   121533
Name   oriT_pH8C110P-cfr in_silico
Organism   Mammaliicoccus sciuri strain GDH8C110P
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP065796 (11774..11814 [+], 41 nt)
oriT length   41 nt
IRs (inverted repeats)      2..8, 13..19  (ACTTTAT..ATAAAGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 41 nt

>oriT_pH8C110P-cfr
CACTTTATGGATATAAAGTATAGTGTGCTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   13575 GenBank   WP_172684477
Name   mobV_I7830_RS14125_pH8C110P-cfr insolico UniProt ID   _
Length   354 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 354 a.a.        Molecular weight: 41930.47 Da        Isoelectric Point: 9.0454

>WP_172684477.1 MULTISPECIES: MobV family relaxase [Staphylococcaceae]
MSFAVVRMQKMKSPDLKGMQFHNQRERESRTNPDIDPDREHLNYDLLHQEKIDYNQQVKAIIESQKVSER
KTRKDAVLVNELLVTSDRKFFDGLDPAEQKRFFEESHKLFSERYGKQNIAYATVHNDEKTPHMHLGVVPM
RDGKLQGKNVFNRQELQWMQEEFPKHMQSVGFEVERGIASDRKHIEMSRFKALTLNEEIKTLEKETEALR
NALTASKKVDELQVTKPSLFDRNHVKLPVEDFEALKARAKATEAIERTIEAHEKRFDDMVDNVIDSDRKL
DQEKRKTAQLQKENNGLKKENLDLQKENKTLKSQLNVLMEFAKSQLEKFKEWQKERQQEKENNIARKRDQ
ELER

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-192)


  Protein structure



No available structure.




Host bacterium

ID   21960 GenBank   NZ_CP065796
Plasmid name   pH8C110P-cfr Incompatibility group   -
Plasmid size   24103 bp Coordinate of oriT [Strand]   11774..11814 [+]
Host baterium   Mammaliicoccus sciuri strain GDH8C110P

Cargo genes

Drug resistance gene   erm(B), aadD, tet(L), cfr
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA21