Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 121524 |
| Name | oriT_FDAARGOS_872|unnamed  |
| Organism | Oligella ureolytica strain FDAARGOS_872 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP065724 (9583..9650 [+], 68 nt) |
| oriT length | 68 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | 53..54 |
| Conserved sequence flanking the nic site |
GGTGTATAGC |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 68 nt
>oriT_FDAARGOS_872|unnamed
TGAAAGTCATTGAAAATCAATGACTTACAAGCGCCGAAAGGTGCGTATGGTGTATAGCCATTTTAAGG
TGAAAGTCATTGAAAATCAATGACTTACAAGCGCCGAAAGGTGCGTATGGTGTATAGCCATTTTAAGG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 13569 | GenBank | WP_115148642 |
| Name | mobF_I6G29_RS00035_FDAARGOS_872|unnamed |
UniProt ID | _ |
| Length | 964 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 964 a.a. Molecular weight: 107773.09 Da Isoelectric Point: 9.3761
>WP_115148642.1 MobF family relaxase [Oligella ureolytica]
MLTHKVLTRQSIGDVAAYYGDGADDYYANEGEASAWQGRGADELGLTGEVDDKRFRELLAGQIGDGQRIM
RMGNREGTKDRIGIDLTFSAPKSVSLQALIAGDAEIIKAHDRAVARALEEAEARAQVRQKVDGKTRIETT
GNLVIGKFRHETSRERDPQLHTHAVILNMSKRSDGQWRALKNDEIVKATKYLGAVYRAELAHELQNLGYQ
VRHERDGMFELAHISREQIAAFSQRSAQVEELLAEKGLTRETATTEEKQLATMQSRSKKVSAERAELHKE
WQDRAKEVGIDFGSREWVGHEQKGRVATPAEYATSEAAKRAVRYAVNHLTERQAVIDERELIDTAVKHAV
GTARLADIENEILKQTATGYLIRETPRYRPGGQTGPTDEPGKTRAEWIAELGERGVKRSEARERVDNAIK
TGGLVPIEARYTTQTALEREKRILQIERDGRGAVAPVVAAEAARERFANTNLNQGQREAAELIVSATNRV
IGVQGFAGTGKSHMLDTAKQVVEAEGYRVRALAPYGSQVKALRELNVEANTLASFLRAKDKKIDNRTVLV
IDEAGVVPTRQMEQTLKLAEKAGARVVLMGDTAQTKAIEAGRPFDQLQAAGMQTAHMKEIQRQKDPELKI
AVELAAQGAASSSLQRIKDVTEIKDHHERRAAVAEEYITLKPEERDRTLIVSGTNEARREINQMVREGLG
TAGKGIEFDTLVRVDTTQAERRYSKNYEVGYVIQPERNYEKTGLQRGELYRVVDTGPGNRLTVIGERDGQ
SIQFSPMTHTKISVYQPDRAELSIGDMVRITRNDKHLDLANGDRMKVVAVEDQKVIVTDGKRNVELPTEK
PLHVDYAYATTVHSSQGLTSDRVLIDAHAQSRTTAKDVYYVAISRARLEAKVFTNDRSKLPTAIARENIK
TAAHDLTRDRTVRQAEAERQREQRREAERTRQQKPAHERQNEGREAQRSMEMGR
MLTHKVLTRQSIGDVAAYYGDGADDYYANEGEASAWQGRGADELGLTGEVDDKRFRELLAGQIGDGQRIM
RMGNREGTKDRIGIDLTFSAPKSVSLQALIAGDAEIIKAHDRAVARALEEAEARAQVRQKVDGKTRIETT
GNLVIGKFRHETSRERDPQLHTHAVILNMSKRSDGQWRALKNDEIVKATKYLGAVYRAELAHELQNLGYQ
VRHERDGMFELAHISREQIAAFSQRSAQVEELLAEKGLTRETATTEEKQLATMQSRSKKVSAERAELHKE
WQDRAKEVGIDFGSREWVGHEQKGRVATPAEYATSEAAKRAVRYAVNHLTERQAVIDERELIDTAVKHAV
GTARLADIENEILKQTATGYLIRETPRYRPGGQTGPTDEPGKTRAEWIAELGERGVKRSEARERVDNAIK
TGGLVPIEARYTTQTALEREKRILQIERDGRGAVAPVVAAEAARERFANTNLNQGQREAAELIVSATNRV
IGVQGFAGTGKSHMLDTAKQVVEAEGYRVRALAPYGSQVKALRELNVEANTLASFLRAKDKKIDNRTVLV
IDEAGVVPTRQMEQTLKLAEKAGARVVLMGDTAQTKAIEAGRPFDQLQAAGMQTAHMKEIQRQKDPELKI
AVELAAQGAASSSLQRIKDVTEIKDHHERRAAVAEEYITLKPEERDRTLIVSGTNEARREINQMVREGLG
TAGKGIEFDTLVRVDTTQAERRYSKNYEVGYVIQPERNYEKTGLQRGELYRVVDTGPGNRLTVIGERDGQ
SIQFSPMTHTKISVYQPDRAELSIGDMVRITRNDKHLDLANGDRMKVVAVEDQKVIVTDGKRNVELPTEK
PLHVDYAYATTVHSSQGLTSDRVLIDAHAQSRTTAKDVYYVAISRARLEAKVFTNDRSKLPTAIARENIK
TAAHDLTRDRTVRQAEAERQREQRREAERTRQQKPAHERQNEGREAQRSMEMGR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 7466 | GenBank | WP_018575422 |
| Name | WP_018575422_FDAARGOS_872|unnamed |
UniProt ID | A0A379B0T2 |
| Length | 121 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 121 a.a. Molecular weight: 13479.45 Da Isoelectric Point: 4.6843
>WP_018575422.1 hypothetical protein [Oligella ureolytica]
MALGDPIQVRLSPEKQLILEDEAARKGKRLATYLRELLESENDVQGELAALRRDVASLHHMVEDLADSGL
RTSDTEQAANPVQIEILLLLRAIAGPERMKPVNGEMKRLGISVWTPDIKED
MALGDPIQVRLSPEKQLILEDEAARKGKRLATYLRELLESENDVQGELAALRRDVASLHHMVEDLADSGL
RTSDTEQAANPVQIEILLLLRAIAGPERMKPVNGEMKRLGISVWTPDIKED
Protein domains
No domain identified.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A379B0T2 |
T4CP
| ID | 15856 | GenBank | WP_018575421 |
| Name | t4cp2_I6G29_RS00040_FDAARGOS_872|unnamed |
UniProt ID | _ |
| Length | 507 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 507 a.a. Molecular weight: 56269.81 Da Isoelectric Point: 9.7913
>WP_018575421.1 type IV secretion system DNA-binding domain-containing protein [Oligella ureolytica]
MHPDDQRKVNAGIIIALPFVFWITAVQKTEVLGSPKLLALWELIKVTPQKPILLFSALGGLAVGVLFAWL
LNSVGQGEFGGAPFKRFLRGTRIVSAGKLKRMTKDKSKQVTVAGVPMPHDAEPRHLLVNGATGTGKSVLL
RELAYTGLLRGDRMVIVDPNGDMLSKFGRDKDIVLNPYDQRTQGWSFFNEIRNDYDWQRYALSVVPRGKT
DEAEEWASYGRLLLRETAKKLSLIGTPSMRELFHWTTIATFDDLRAFLEGTLAESLFAGSNEASKALTSA
RFVLSDKLPEHVTMPDGDFSIRSWLEDPNGGNLFITWREDMGPALRPLISAWVDVVCTSILSLPEDSKRR
LWLFIDELASLEKLASLADALTKGRKAGLRVVAGLQSTSQLDDVYGVKEAQTLRASFRSLVVLGGSRTDP
KTNEDMSLSLGEHEVERDRHSKNTGRHHSTGRALERVRERVVMPAEIANLPDLTAYIAFAGDRPIAKVPL
KIKKFVDRQPAFIEGGI
MHPDDQRKVNAGIIIALPFVFWITAVQKTEVLGSPKLLALWELIKVTPQKPILLFSALGGLAVGVLFAWL
LNSVGQGEFGGAPFKRFLRGTRIVSAGKLKRMTKDKSKQVTVAGVPMPHDAEPRHLLVNGATGTGKSVLL
RELAYTGLLRGDRMVIVDPNGDMLSKFGRDKDIVLNPYDQRTQGWSFFNEIRNDYDWQRYALSVVPRGKT
DEAEEWASYGRLLLRETAKKLSLIGTPSMRELFHWTTIATFDDLRAFLEGTLAESLFAGSNEASKALTSA
RFVLSDKLPEHVTMPDGDFSIRSWLEDPNGGNLFITWREDMGPALRPLISAWVDVVCTSILSLPEDSKRR
LWLFIDELASLEKLASLADALTKGRKAGLRVVAGLQSTSQLDDVYGVKEAQTLRASFRSLVVLGGSRTDP
KTNEDMSLSLGEHEVERDRHSKNTGRHHSTGRALERVRERVVMPAEIANLPDLTAYIAFAGDRPIAKVPL
KIKKFVDRQPAFIEGGI
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 21951 | GenBank | NZ_CP065724 |
| Plasmid name | FDAARGOS_872|unnamed | Incompatibility group | - |
| Plasmid size | 33996 bp | Coordinate of oriT [Strand] | 9583..9650 [+] |
| Host baterium | Oligella ureolytica strain FDAARGOS_872 |
Cargo genes
| Drug resistance gene | sul2 |
| Virulence gene | trwG, trwF, trwD, trwM, trwK |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |