Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   121514
Name   oriT_FDAARGOS_893|unnamed in_silico
Organism   Lactococcus garvieae strain FDAARGOS_893
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP065690 (19627..19763 [-], 137 nt)
oriT length   137 nt
IRs (inverted repeats)      21..28, 42..49  (AAAAGGGG..CCCCTTTT)
 25..30, 39..44  (GGGGAA..TTCCCC)
Location of nic site      104..105
Conserved sequence flanking the
  nic site    		  GCTTGCAGTA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 137 nt

>oriT_FDAARGOS_893|unnamed
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGTTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATGGTCTATTTTGTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   13564 GenBank   WP_197908150
Name   Relaxase_I6G50_RS00125_FDAARGOS_893|unnamed insolico UniProt ID   _
Length   410 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 410 a.a.        Molecular weight: 47723.40 Da        Isoelectric Point: 9.0605

>WP_197908150.1 relaxase/mobilization nuclease domain-containing protein [Lactococcus garvieae]
MATIAKISNGASAASALNYALGQDRPMHEKTEQWLQDHQLERPVELTNCRAVAVGGTNGIDPFIAKEQFD
VIRQLHNQTKESNQVLRITQSFALDELNPKVQKDWQKANDLGVELAENLYPNHQSAVYTHLDGKNHVLHN
HIIVNKVNLETGKKLREQKGESVQRAREMNDRLASRENWHILEPPKERQTETEKELIAKNEYSYMDDLRE
RINKSLQDLSVSSYETFKERLSDNGVILSERGQTFSYAFLDANNKQRRARETRLGSDFGRETILHELENR
ARQNEFRAVEQREPAITPLERDTQQRESEIVSLEQAIEPRKSEALKRESTINRFIDTLKQLAGRVPQLTQ
RVTRKLKQTKDKILDDFERRFSKDMKNYEKEQQKSLEKQANRDVQSEKKPTKDHDRGMSR

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(9-280)


  Protein structure



No available structure.




Host bacterium

ID   21941 GenBank   NZ_CP065690
Plasmid name   FDAARGOS_893|unnamed Incompatibility group   -
Plasmid size   26514 bp Coordinate of oriT [Strand]   19627..19763 [-]
Host baterium   Lactococcus garvieae strain FDAARGOS_893

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA7