Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 121512 |
| Name | oriT_FDAARGOS_913|unnamed2  |
| Organism | Staphylococcus epidermidis strain FDAARGOS_913 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP065655 (3729..3849 [+], 121 nt) |
| oriT length | 121 nt |
| IRs (inverted repeats) | 53..58, 64..69 (TTGGGG..CCCCAA) 22..29, 34..41 (ATTTTTTC..GAAAAAAT) 1..8, 14..21 (AGTGGCTA..TAGCCACT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 121 nt
>oriT_FDAARGOS_913|unnamed2
AGTGGCTAGCAATTAGCCACTATTTTTTCGTTAGAAAAAATCCATAAGGGGCTTGGGGATTACCCCCAACAAGCAGGCGCGTCTGCCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA
AGTGGCTAGCAATTAGCCACTATTTTTTCGTTAGAAAAAATCCATAAGGGGCTTGGGGATTACCCCCAACAAGCAGGCGCGTCTGCCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 13562 | GenBank | WP_002498904 |
| Name | Relaxase_I6G70_RS00075_FDAARGOS_913|unnamed2 |
UniProt ID | A0A0H2VJA7 |
| Length | 336 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 336 a.a. Molecular weight: 38414.55 Da Isoelectric Point: 9.8063
>WP_002498904.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Bacillales]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKAARELYGKTDGNQGHVIIQSFQPGEVTPE
QCNQLGLALAEKLVPNHQVAVYTHADTNHVHNHIVLNSIDLNTGKKFNNNKQALRDVRAFNDEVCRAQGL
SVPEKDTARLRYTQTEKAIADPNTTSTAQYSWKDDIREAIDQSTATNMEEFQKHLNQHGITIERVTPKSI
TYRHLAENKKVRGRKLGEDYNKGGIQHGFERQIQRRQQQKHKSDTNFQPKRSTSNRHESTERDTGVTQSD
WDQFAQDTNELERRRQAAESARLVDEKARRDREKRVREKPTSRPIINIDRDHGLEL
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKAARELYGKTDGNQGHVIIQSFQPGEVTPE
QCNQLGLALAEKLVPNHQVAVYTHADTNHVHNHIVLNSIDLNTGKKFNNNKQALRDVRAFNDEVCRAQGL
SVPEKDTARLRYTQTEKAIADPNTTSTAQYSWKDDIREAIDQSTATNMEEFQKHLNQHGITIERVTPKSI
TYRHLAENKKVRGRKLGEDYNKGGIQHGFERQIQRRQQQKHKSDTNFQPKRSTSNRHESTERDTGVTQSD
WDQFAQDTNELERRRQAAESARLVDEKARRDREKRVREKPTSRPIINIDRDHGLEL
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A0H2VJA7 |
Host bacterium
| ID | 21939 | GenBank | NZ_CP065655 |
| Plasmid name | FDAARGOS_913|unnamed2 | Incompatibility group | - |
| Plasmid size | 6585 bp | Coordinate of oriT [Strand] | 3729..3849 [+] |
| Host baterium | Staphylococcus epidermidis strain FDAARGOS_913 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |