Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 121501
• Name: oriT_M1C142_1|unnamed_2
• Organism: Haemophilus parainfluenzae strain M1C142_1
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP063119 (1601..1629 [+], 29 nt)
• oriT length: 29 nt
• IRs (inverted repeats): 2..10, 14..22 (CAGTTTCTC..GAGAAACTG)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 29 nt

>oriT_M1C142_1|unnamed_2
CCAGTTTCTCGCAGAGAAACTGATAAGTG

oriT secondary structure

Predicted by RNAfold.

Relaxase

MobA_MobL_INP95_RS09800_M1C142_1|unnamed_2

• ID: 13556
• GenBank: WP_197561055
• Name: MobA_MobL_INP95_RS09800_M1C142_1|unnamed_2
• UniProt ID: _
• Length: 478 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 478 a.a.
• Molecular weight: 56190.89 Da
• Isoelectric Point: 8.4819

>WP_197561055.1 MobA/MobL family protein [Haemophilus parainfluenzae]
MAIYHLNVRYCSKSKGQSAQAKNDYINRNDKYSKRLDDLQFSGYGNMPKFAEDNPQEFWRLSDIYERANA
RVCTEIEFALPRELTLEQQQKLVSSFIENTVDSGSNKLPYSFAIHTDKNNHNPHCHLIFSERQLDGIDRT
AEQFFKRANTKSPEKGGAMKTADFRDREFIQSVRKTWREQANQALEQYGYAARIDERSYKEQGIEQAPRA
RIDRVTWQELNRLEQEERQIVQELALKGQEINKEKSYLKKIEEKQAQGMGKYESKFAAAFSKLSESALKH
DLSNEKEKDSKIHAQEEKVPQNRIQGLSQADFDQFLIDEWLPQIEKYVKAQEKRDGMEVEITQYDKDLQR
IQGEYNKLTDKNQGFLGLWETKEQKAKKKELEDEYKHTAEQRNAKSQELAEYSQKIKAYEQKTLEPINEK
IAKYQADNPEIKMRSLGFVKKIKAQGAYKAAQERMEREKQHQQEKQQRHLERESGLSL

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (23-211)

Protein structure

No available structure.

Host bacterium

• ID: 21928
• GenBank: NZ_CP063119
• Plasmid name: M1C142_1|unnamed_2
• Incompatibility group: -
• Plasmid size: 4208 bp
• Coordinate of oriT [Strand]: 1601..1629 [+]
• Host baterium: Haemophilus parainfluenzae strain M1C142_1

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -