Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   121491
Name   oriT_pWP3-W19-ESBL-03_3 in_silico
Organism   Aeromonas veronii strain WP3-W19-ESBL-03
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_AP022041 (6..41 [-], 36 nt)
oriT length   36 nt
IRs (inverted repeats)      3..9, 13..19  (GTTTCTC..GAGAAAC)
Location of nic site      30..31
Conserved sequence flanking the
  nic site    		  GTGCGCCCTC
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 36 nt

>oriT_pWP3-W19-ESBL-03_3
CAGTTTCTCGCAGAGAAACCGGTAAGTGCGCCCTCC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   13548 GenBank   WP_182939830
Name   MobA_MobL_H7R62_RS23085_pWP3-W19-ESBL-03_3 insolico UniProt ID   _
Length   705 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 705 a.a.        Molecular weight: 78009.89 Da        Isoelectric Point: 7.3286

>WP_182939830.1 DNA-primase RepB domain-containing protein [Aeromonas veronii]
MAIFHLAAKTGSRGGGQSAKAKADYIQREGKYARDKDEVLHTQSGNMPSWAAGAAEVGNYWDAADLYERA
NGRLFKEVEFALPIELTLDQQRVLVDDFAKYLTEVERLPYTLAIHKGGGENPHCHLMMSERKNDGVERKK
DQWFSRYNPKNPGQGGAQKTESLKPKAWLEKTRAAWADHANRALEMAGHEARIDHRTLEAQGIERLPTIH
LGPNVVEMEGRGIRTGRADTALSIETANTEIIDLQAYRESIDHERDRQSEAGQRDRRAGGADRAAGAELG
DSRRQGRDGDRGDSKCQHKAGWRVGDPAGQSRDGVGRHSQGHEGRSRGTGQGSREGRGRSESVGMEDFRS
HLDGFSAVYASAADRIVALADPGTQDDKGGGNVATTQAQVKGDRTSQAIARQLKAMGCDLYDIGIRDSAT
GKMMNREWTLQEVVENAAWLKRMNAQGNDIYIRPAESARHGLVLVDDLSSFDLDAMKEEGREPAAVIETS
PKNYQAWVKVAANAPAEHRGAIARRLAREYDADPASADSHHYGRLAGFTNQKPKHTTKTGYQPWVLCRAS
SGQAATTGPQMVQEAGQELESKERQQEQARRLEGIETAQPRRYHRTALDEYRSEMAGLVKRFGDDLSKCD
YIAAMKLAMKGIDPDEIAKAMAEASPGLMDRKAGHEADYIERTIKKVMALPEVQKIRAELEQTQKTKREY
PTLEM

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(21-220)

RepB DNA-primase from phage plasmid (RepB_primase)

(419-592)


  Protein structure



No available structure.




Host bacterium

ID   21918 GenBank   NZ_AP022041
Plasmid name   pWP3-W19-ESBL-03_3 Incompatibility group   IncQ1
Plasmid size   4989 bp Coordinate of oriT [Strand]   6..41 [-]
Host baterium   Aeromonas veronii strain WP3-W19-ESBL-03

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -