Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   121488
Name   oriT_pWP9-W18-ESBL-04_3 in_silico
Organism   Aeromonas veronii strain WP9-W18-ESBL-04
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_AP022293 (2602..2630 [-], 29 nt)
oriT length   29 nt
IRs (inverted repeats)      2..9, 13..20  (GACTTTAC..GTAAAGTC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 29 nt

>oriT_pWP9-W18-ESBL-04_3
CGACTTTACGAAGTAAAGTCTAGTGAGTA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   13545 GenBank   WP_182971140
Name   mobV_H7R81_RS22810_pWP9-W18-ESBL-04_3 insolico UniProt ID   _
Length   336 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 336 a.a.        Molecular weight: 37505.06 Da        Isoelectric Point: 10.4367

>WP_182971140.1 MULTISPECIES: MobV family relaxase [Gammaproteobacteria]
MAAFAIMRCKKLSGMGSVAASLKHCFRERDTPNADPERLRHNMHMAARSTDEAMGKLREKLPEKRRKDAV
LAIEYVLSASPEWWINADSGRKADFYQSSMDWLAEKYGRENILVSSIHLDEKTPHMSAFVVPLTKDGRLS
AKEFIGNRTKMSNDQSSYAEAVKHLGLVRGIEGSKATHKRIKAHYNALGQQIPVPPAIREEDLKPQSEQG
PGLLGKIGLRPMVETPLGVAERLNAKFAKAFKVVAEKASESDSQRGAAVRARMALADTQKQLQALQEPFK
GLSKEQVAEVLKQAVAMQQDNQQRQQEQDLARKLEAEIRRKMAPEKGPKPSRGFGR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-185)


  Protein structure



No available structure.




Host bacterium

ID   21915 GenBank   NZ_AP022293
Plasmid name   pWP9-W18-ESBL-04_3 Incompatibility group   -
Plasmid size   2881 bp Coordinate of oriT [Strand]   2602..2630 [-]
Host baterium   Aeromonas veronii strain WP9-W18-ESBL-04

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -